Statistics of regulated genes

Genome	Genes	Operons
Desulfovibrio vulgaris Hildenborough	5	3
Desulfovibrio vulgaris str. Miyazaki F	3	2
Desulfovibrio desulfuricans G20	6	4
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638	6	4
Desulfovibrio magneticus RS-1	8	4
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028	5	4
Desulfohalobium retbaense DSM 5692	3	3

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes											Function
CRON 1.
DVU1080	* Desulfovibrio vulgaris Hildenborough Site: position = -234 score = 4.41419 sequence = GTGTGACCCGCGTCACAG Gene: DVU1080: nitrite and sulphite reductase 4Fe-4S region	Desulfovibrio vulgaris str. Miyazaki F	* Desulfovibrio desulfuricans G20 Site: position = -80 score = 4.54509 sequence = ATGTGACCTGCATCACAG Gene: Dde_2390: nitrite and sulphite reductase 4Fe-4S region	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -77 score = 4.03772 sequence = AAATGACTTAAGTCAGGG Gene: Desal_2852: nitrite and sulphite reductase 4Fe-4S region	* Desulfovibrio magneticus RS-1 Site: position = -93 score = 5.25858 sequence = GCTTGACGTAAGTCAAGG Gene: DMR_35330: nitrite and sulphite reductase 4Fe-4S region	Lawsonia intracellularis PHE/MN1-00	* Desulfomicrobium baculatum DSM 4028 Site: position = -52 score = 6.06698 sequence = TTTTGACCTAGGTCAAGG Gene: Dbac_1379: nitrite and sulphite reductase 4Fe-4S region	Desulfohalobium retbaense DSM 5692 Gene: Dret_1278: nitrite and sulphite reductase 4Fe-4S region	nitrite and sulphite reductase 4Fe-4S region
DVU1081	Desulfovibrio vulgaris Hildenborough Gene: DVU1081: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20 Gene: Dde_2389: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0525: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00341: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio salexigens DSM 2638 Gene: Desal_2851: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio magneticus RS-1 Gene: DMR_35340: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1378: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfohalobium retbaense DSM 5692 Gene: Dret_1277: 4Fe-4S ferredoxin iron-sulfur binding domain protein	4Fe-4S ferredoxin iron-sulfur binding domain protein
CRON 2.
DMR_12610	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio magneticus RS-1 Site: position = -64 score = 5.04408 sequence = ATTTGACTTAGGTCATGT Gene: DMR_12610: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	hypothetical protein
Dbac_1921	* Desulfovibrio vulgaris Hildenborough Site: position = -95 score = 4.71836 sequence = CTGTGACCCACGTCACGG Gene: DVU3251: HPP family protein	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -122 score = 4.3906 sequence = ATGTGACCCCGATCACGG Gene: DvMF_2445: HPP family protein	* Desulfovibrio desulfuricans G20 Site: position = -50 score = 4.79007 sequence = ATGTGACGCAGGTCACAG Gene: Dde_0503: HPP family protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0524: HPP family protein	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00646: HPP family protein	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1 Gene: DMR_12600: HPP family protein	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1921: HPP family protein	Desulfohalobium retbaense DSM 5692	HPP family protein
CRON 3.
nrfH	Desulfovibrio vulgaris Hildenborough Gene: DVU0624: Cytochrome c nitrite reductase, small subunit NrfH	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -151 score = 5.28491 sequence = TTTTGACTTAAGTCATAG Gene: Desal_0751: Cytochrome c nitrite reductase, small subunit NrfH	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Cytochrome c nitrite reductase, small subunit NrfH
nrfA	Desulfovibrio vulgaris Hildenborough Gene: DVU0625: Nitrite reductase (cytochrome; ammonia-forming)	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0750: Nitrite reductase (cytochrome; ammonia-forming)	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Nitrite reductase (cytochrome; ammonia-forming)
CRON 4.
CRON 5.
hcpR	Desulfovibrio vulgaris Hildenborough Gene: DVU2547: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0993: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	Desulfovibrio desulfuricans G20 Gene: Dde_2644: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -51 score = 3.90601 sequence = CCCTGACTTAAGTCATTT Gene: Desal_2853: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	* Desulfovibrio magneticus RS-1 Site: position = -41 score = 5.28553 sequence = CCTTGACTTACGTCAAGC Gene: DMR_35320: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2118: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	Desulfohalobium retbaense DSM 5692 Gene: Dret_1279: Nitric oxide-resposive transcriptional regulator HcpR, Crp family	Nitric oxide-resposive transcriptional regulator HcpR, Crp family
CRON 6.
CRON 7.
hcp	* Desulfovibrio vulgaris Hildenborough Site: position = -184 score = 4.75982 sequence = ATTTGACGCACGTCACAA Gene: DVU2543: Hydroxylamine reductase (EC 1.7.-.-)	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -211 score = 4.74855 sequence = TTTTGATGTCCGTCACAT Gene: DvMF_0988: Hydroxylamine reductase (EC 1.7.-.-)	* Desulfovibrio desulfuricans G20 Site: position = -153 score = 4.62293 sequence = TTGTGACTCCGGTCACAT Gene: Dde_2641: Hydroxylamine reductase (EC 1.7.-.-)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -238 score = 5.1007 sequence = CCTTGACCTGAATCAAAT Site: position = -88 score = 5.21945 sequence = TTTTGATCTGAATCAAAT Gene: Desal_2849: Hydroxylamine reductase (EC 1.7.-.-)	* Desulfovibrio magneticus RS-1 Site: position = -94 score = 5.76335 sequence = TTTTGACTTAGGTCAAAC Gene: DMR_35370: Hydroxylamine reductase (EC 1.7.-.-)	Lawsonia intracellularis PHE/MN1-00 Gene: LI1116: Hydroxylamine reductase (EC 1.7.-.-)	*2 Desulfomicrobium baculatum DSM 4028 Site: position = -82 score = 5.50156 sequence = TTTTGATCCAGCTCAAAG Gene: Dbac_2941: Hydroxylamine reductase (EC 1.7.-.-) Site: position = -94 score = 5.63163 sequence = TTTTGATCTGCGTCAAAG Gene: Dbac_0596: Hydroxylamine reductase (EC 1.7.-.-)	* Desulfohalobium retbaense DSM 5692 Site: position = -121 score = 5.96466 sequence = TTTTGACTCAGGTCAAAG Gene: Dret_2386: Hydroxylamine reductase (EC 1.7.-.-)	Hydroxylamine reductase (EC 1.7.-.-)
frdX	Desulfovibrio vulgaris Hildenborough Gene: DVU2544: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0989: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio desulfuricans G20 Gene: Dde_2642: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_2848: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Desulfovibrio magneticus RS-1 Gene: DMR_35380: 4Fe-4S ferredoxin iron-sulfur binding domain protein	Lawsonia intracellularis PHE/MN1-00	* Desulfomicrobium baculatum DSM 4028 Site: position = -74 score = 5.40134 sequence = TTTTGACATGGCTCAAAG Gene: Dbac_1823: 4Fe-4S ferredoxin iron-sulfur binding domain protein	* Desulfohalobium retbaense DSM 5692 Site: position = -93 score = 5.31763 sequence = ATTTGATCCGCGTCAAAG Gene: Dret_1280: 4Fe-4S ferredoxin iron-sulfur binding domain protein	4Fe-4S ferredoxin iron-sulfur binding domain protein
Dde_2303	Desulfovibrio vulgaris Hildenborough Gene: DVU1241: Cupin 2 conserved barrel domain protein	Desulfovibrio vulgaris str. Miyazaki F	* Desulfovibrio desulfuricans G20 Site: position = -111 score = 5.04684 sequence = TTTTGACGTGGGTCACGC Gene: Dde_2303: Cupin 2 conserved barrel domain protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1164: Cupin 2 conserved barrel domain protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1 Gene: DMR_35390: Cupin 2 conserved barrel domain protein	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	* Desulfohalobium retbaense DSM 5692 Site: position = -105 score = 5.6602 sequence = TTTTGATGCAGGTCAAAG Gene: Dret_2382: Cupin 2 conserved barrel domain protein	Cupin 2 conserved barrel domain protein

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