Regulog HcpR - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - HcpR
- By TF family - CRP
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 5 | 3 |
| Desulfovibrio vulgaris str. Miyazaki F | 3 | 2 |
| Desulfovibrio desulfuricans G20 | 6 | 4 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 6 | 4 |
| Desulfovibrio magneticus RS-1 | 8 | 4 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 5 | 4 |
| Desulfohalobium retbaense DSM 5692 | 3 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| DVU1080 |
*
Desulfovibrio vulgaris Hildenborough Site: position = -234 score = 4.41419 sequence = GTGTGACCCGCGTCACAG Gene: DVU1080: nitrite and sulphite reductase 4Fe-4S region |
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Desulfovibrio desulfuricans G20 Site: position = -80 score = 4.54509 sequence = ATGTGACCTGCATCACAG Gene: Dde_2390: nitrite and sulphite reductase 4Fe-4S region |
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*
Desulfovibrio salexigens DSM 2638 Site: position = -77 score = 4.03772 sequence = AAATGACTTAAGTCAGGG Gene: Desal_2852: nitrite and sulphite reductase 4Fe-4S region |
*
Desulfovibrio magneticus RS-1 Site: position = -93 score = 5.25858 sequence = GCTTGACGTAAGTCAAGG Gene: DMR_35330: nitrite and sulphite reductase 4Fe-4S region |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -52 score = 6.06698 sequence = TTTTGACCTAGGTCAAGG Gene: Dbac_1379: nitrite and sulphite reductase 4Fe-4S region |
Gene: Dret_1278: nitrite and sulphite reductase 4Fe-4S region |
nitrite and sulphite reductase 4Fe-4S region |
| DVU1081 |
Gene: DVU1081: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
|
Gene: Dde_2389: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: Ddes_0525: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: DESPIG_00341: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: Desal_2851: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: DMR_35340: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
|
Gene: Dbac_1378: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: Dret_1277: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
4Fe-4S ferredoxin iron-sulfur binding domain protein |
| CRON 2. | |||||||||||
| DMR_12610 |
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*
Desulfovibrio magneticus RS-1 Site: position = -64 score = 5.04408 sequence = ATTTGACTTAGGTCATGT Gene: DMR_12610: hypothetical protein |
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hypothetical protein |
| Dbac_1921 |
*
Desulfovibrio vulgaris Hildenborough Site: position = -95 score = 4.71836 sequence = CTGTGACCCACGTCACGG Gene: DVU3251: HPP family protein |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -122 score = 4.3906 sequence = ATGTGACCCCGATCACGG Gene: DvMF_2445: HPP family protein |
*
Desulfovibrio desulfuricans G20 Site: position = -50 score = 4.79007 sequence = ATGTGACGCAGGTCACAG Gene: Dde_0503: HPP family protein |
Gene: Ddes_0524: HPP family protein |
Gene: DESPIG_00646: HPP family protein |
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Gene: DMR_12600: HPP family protein |
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Gene: Dbac_1921: HPP family protein |
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HPP family protein |
| CRON 3. | |||||||||||
| nrfH |
Gene: DVU0624: Cytochrome c nitrite reductase, small subunit NrfH |
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Desulfovibrio salexigens DSM 2638 Site: position = -151 score = 5.28491 sequence = TTTTGACTTAAGTCATAG Gene: Desal_0751: Cytochrome c nitrite reductase, small subunit NrfH |
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Cytochrome c nitrite reductase, small subunit NrfH |
| nrfA |
Gene: DVU0625: Nitrite reductase (cytochrome; ammonia-forming) |
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Gene: Desal_0750: Nitrite reductase (cytochrome; ammonia-forming) |
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Nitrite reductase (cytochrome; ammonia-forming) |
| CRON 4. | |||||||||||
| CRON 5. | |||||||||||
| hcpR |
Gene: DVU2547: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Gene: DvMF_0993: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Gene: Dde_2644: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
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*
Desulfovibrio salexigens DSM 2638 Site: position = -51 score = 3.90601 sequence = CCCTGACTTAAGTCATTT Gene: Desal_2853: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
*
Desulfovibrio magneticus RS-1 Site: position = -41 score = 5.28553 sequence = CCTTGACTTACGTCAAGC Gene: DMR_35320: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
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Gene: Dbac_2118: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Gene: Dret_1279: Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
Nitric oxide-resposive transcriptional regulator HcpR, Crp family |
| CRON 6. | |||||||||||
| CRON 7. | |||||||||||
| hcp |
*
Desulfovibrio vulgaris Hildenborough Site: position = -184 score = 4.75982 sequence = ATTTGACGCACGTCACAA Gene: DVU2543: Hydroxylamine reductase (EC 1.7.-.-) |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -211 score = 4.74855 sequence = TTTTGATGTCCGTCACAT Gene: DvMF_0988: Hydroxylamine reductase (EC 1.7.-.-) |
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Desulfovibrio desulfuricans G20 Site: position = -153 score = 4.62293 sequence = TTGTGACTCCGGTCACAT Gene: Dde_2641: Hydroxylamine reductase (EC 1.7.-.-) |
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*
Desulfovibrio salexigens DSM 2638 Site: position = -238 score = 5.1007 sequence = CCTTGACCTGAATCAAAT Site: position = -88 score = 5.21945 sequence = TTTTGATCTGAATCAAAT Gene: Desal_2849: Hydroxylamine reductase (EC 1.7.-.-) |
*
Desulfovibrio magneticus RS-1 Site: position = -94 score = 5.76335 sequence = TTTTGACTTAGGTCAAAC Gene: DMR_35370: Hydroxylamine reductase (EC 1.7.-.-) |
Gene: LI1116: Hydroxylamine reductase (EC 1.7.-.-) |
*2
Desulfomicrobium baculatum DSM 4028 Site: position = -82 score = 5.50156 sequence = TTTTGATCCAGCTCAAAG Gene: Dbac_2941: Hydroxylamine reductase (EC 1.7.-.-) Site: position = -94 score = 5.63163 sequence = TTTTGATCTGCGTCAAAG Gene: Dbac_0596: Hydroxylamine reductase (EC 1.7.-.-) |
*
Desulfohalobium retbaense DSM 5692 Site: position = -121 score = 5.96466 sequence = TTTTGACTCAGGTCAAAG Gene: Dret_2386: Hydroxylamine reductase (EC 1.7.-.-) |
Hydroxylamine reductase (EC 1.7.-.-) |
| frdX |
Gene: DVU2544: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: DvMF_0989: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: Dde_2642: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
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Gene: Desal_2848: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
Gene: DMR_35380: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -74 score = 5.40134 sequence = TTTTGACATGGCTCAAAG Gene: Dbac_1823: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
*
Desulfohalobium retbaense DSM 5692 Site: position = -93 score = 5.31763 sequence = ATTTGATCCGCGTCAAAG Gene: Dret_1280: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
4Fe-4S ferredoxin iron-sulfur binding domain protein |
| Dde_2303 |
Gene: DVU1241: Cupin 2 conserved barrel domain protein |
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Desulfovibrio desulfuricans G20 Site: position = -111 score = 5.04684 sequence = TTTTGACGTGGGTCACGC Gene: Dde_2303: Cupin 2 conserved barrel domain protein |
Gene: Ddes_1164: Cupin 2 conserved barrel domain protein |
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Gene: DMR_35390: Cupin 2 conserved barrel domain protein |
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Desulfohalobium retbaense DSM 5692 Site: position = -105 score = 5.6602 sequence = TTTTGATGCAGGTCAAAG Gene: Dret_2382: Cupin 2 conserved barrel domain protein |
Cupin 2 conserved barrel domain protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |