Regulog ZraR - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By effector - Zinc ion, (Zn2+)
- By pathway - Zinc homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | ||
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfovibrio desulfuricans G20 | 4 | 3 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 1 | 1 |
| Desulfovibrio magneticus RS-1 | 2 | 1 |
| Desulfovibrio piger ATCC 29098 | 1 | 1 |
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio vulgaris Hildenborough | 3 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 3 | 2 |
| Lawsonia intracellularis PHE/MN1-00 | 3 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| zraS |
|
Gene: Dbac_1016: Sensor protein of zinc sigma-54-dependent two-component system |
*
Desulfovibrio desulfuricans G20 Site: position = -32 score = 5.00962 sequence = TGTACAAATATTGAACA Site: position = -50 score = 4.98329 sequence = TGTATAAAAAATAGACG Site: position = -84 score = 5.29568 sequence = TGTATAAAAAACATACA Gene: Dde_0110: Sensor protein of zinc sigma-54-dependent two-component system |
Gene: Ddes_0186: Sensor protein of zinc sigma-54-dependent two-component system |
*
Desulfovibrio magneticus RS-1 Site: position = -19 score = 4.12461 sequence = TGTATAGAATGTATGCA Gene: DMR_19620: Sensor protein of zinc sigma-54-dependent two-component system |
Gene: DESPIG_02785: Sensor protein of zinc sigma-54-dependent two-component system |
|
*
Desulfovibrio vulgaris Hildenborough Site: position = -414 score = 4.77026 sequence = CGTATGAAAATGATACA Site: position = -382 score = 5.01274 sequence = TGTATAAAAAATATACT Site: position = -74 score = 5.02148 sequence = TGTATGAAAAATAGACA Gene: DVU3382: Sensor protein of zinc sigma-54-dependent two-component system |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -78 score = 4.5705 sequence = CGTATGAAAATCGAACA Site: position = -110 score = 5.09704 sequence = TGTATAAAAACTATACG Gene: DvMF_2148: Sensor protein of zinc sigma-54-dependent two-component system |
*
Lawsonia intracellularis PHE/MN1-00 Site: position = -19 score = 5.49294 sequence = TGTATAAAAAATATACA Gene: LI1078: Sensor protein of zinc sigma-54-dependent two-component system |
Sensor protein of zinc sigma-54-dependent two-component system |
| zraR |
|
Gene: Dbac_1017: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Dde_0109: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Ddes_0187: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DMR_19630: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DESPIG_02784: two component, sigma54 specific, transcriptional regulator, Fis family |
|
Gene: DVU3381: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DvMF_2149: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: LI1079: two component, sigma54 specific, transcriptional regulator, Fis family |
two component, sigma54 specific, transcriptional regulator, Fis family |
| CRON 2. | |||||||||||
| zraP |
|
|
*2
Desulfovibrio desulfuricans G20 Site: position = -169 score = 5.29568 sequence = TGTATGTTTTTTATACA Site: position = -221 score = 5.00962 sequence = TGTTCAATATTTGTACA Site: position = -203 score = 4.98329 sequence = CGTCTATTTTTTATACA Gene: Dde_0111: Zinc resistance-associated protein Site: position = -190 score = 4.82856 sequence = TGTATAAAAAAAAGACA Site: position = -136 score = 5.47467 sequence = TGTATAAAAATTGTACA Site: position = -172 score = 4.66812 sequence = TGTCTTGTTTTTATACA Gene: Dde_2819: Zinc resistance-associated protein |
|
|
*
Desulfovibrio piger ATCC 29098 Site: position = -211 score = 4.2252 sequence = TGCATAAAAACTGGACA Site: position = -243 score = 4.685 sequence = TGTATAATTTTTGACCA Gene: DESPIG_02788: Zinc resistance-associated protein |
|
*
Desulfovibrio vulgaris Hildenborough Site: position = -226 score = 5.01274 sequence = AGTATATTTTTTATACA Site: position = -194 score = 4.77026 sequence = TGTATCATTTTCATACG Gene: DVU3384: Zinc resistance-associated protein |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -242 score = 5.09704 sequence = CGTATAGTTTTTATACA Site: position = -274 score = 4.5705 sequence = TGTTCGATTTTCATACG Gene: DvMF_2147: Zinc resistance-associated protein |
|
Zinc resistance-associated protein |
| CRON 3. | |||||||||||
| LI1080 |
Gene: Dret_0248: hypothetical protein |
Gene: Dbac_0283: hypothetical protein |
Gene: Dde_1143: hypothetical protein |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -228 score = 4.12657 sequence = TGTTTTATTAGTAGACA Gene: Ddes_1704: hypothetical protein |
Gene: DMR_39630: hypothetical protein |
Gene: DESPIG_01431: hypothetical protein |
Gene: Desal_1471: hypothetical protein |
Gene: DVU0772: hypothetical protein |
Gene: DvMF_2834: hypothetical protein |
*
Lawsonia intracellularis PHE/MN1-00 Site: position = 13 score = 4.94622 sequence = TGTATGAGTTTTATACA Gene: LI1080: hypothetical protein |
hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |