Regulog yybP-ykoY - Desulfovibrionales
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/delta |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 1 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 1 | 1 |
| Desulfovibrio desulfuricans G20 | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 1 | 1 |
| Desulfovibrio piger ATCC 29098 | 1 | 1 |
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio magneticus RS-1 | 1 | 1 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 2 | 2 |
| Desulfohalobium retbaense DSM 5692 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ykoY |
Gene: DVU0567: Membrane protein TerC, possibly involved in tellurium resistance |
Gene: DvMF_1240: Membrane protein TerC, possibly involved in tellurium resistance |
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Desulfomicrobium baculatum DSM 4028 Site: position = -360 score = 64.78 sequence = TATCCTTTGAAGGGG... Gene: Dbac_1946: Membrane protein TerC, possibly involved in tellurium resistance |
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Membrane protein TerC, possibly involved in tellurium resistance |
| CRON 2. | |||||||||||
| COG0530 |
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Desulfovibrio vulgaris Hildenborough Site: position = -174 score = 55.72 sequence = AGGGGAGTAGCTAGC... Gene: DVU2617: Sodium/calcium exchanger family protein, COG0530 |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -185 score = 48.68 sequence = CAAGGGGAGTAGCCA... Gene: DvMF_1109: Sodium/calcium exchanger family protein, COG0530 |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -147 score = 55.53 sequence = CTGGCTGCTACAAGG... Gene: Ddes_0594: Sodium/calcium exchanger family protein, COG0530 |
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Desulfovibrio piger ATCC 29098 Site: position = -173 score = 58.01 sequence = TCCGCACCTAAGGGG... Gene: DESPIG_02522: Sodium/calcium exchanger family protein, COG0530 |
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Desulfovibrio magneticus RS-1 Site: position = -164 score = 63.78 sequence = GCCTTCCCAAAGGGG... Gene: DMR_44260: Sodium/calcium exchanger family protein, COG0530 |
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Sodium/calcium exchanger family protein, COG0530 |
| CRON 3. | |||||||||||
| htpX |
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Desulfomicrobium baculatum DSM 4028 Site: position = -183 score = 49.89 sequence = TAAATCAAAAAGGGG... Gene: Dbac_1612: Protease HtpX homolog |
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Protease HtpX homolog |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |