Regulog HrsM - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - LysR

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692	3	1
Desulfomicrobium baculatum DSM 4028	7	3
Desulfovibrio desulfuricans G20	2	1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1	1	1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638	4	3
Desulfovibrio vulgaris Hildenborough	4	2
Desulfovibrio vulgaris str. Miyazaki F	4	2
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
ahpC	2 Desulfohalobium retbaense DSM 5692 Gene: Dret_1862: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Gene: Dret_1861: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	2 Desulfomicrobium baculatum DSM 4028* Site: position = -36 score = 4.84237 sequence = TATCGTTATCATCAATA Gene: Dbac_2098: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Gene: Dbac_2099: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0602: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Desulfovibrio magneticus RS-1 Gene: DMR_07700: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Desulfovibrio piger ATCC 29098	2 Desulfovibrio salexigens DSM 2638* Site: position = -83 score = 4.73034 sequence = TATCGACTTTTTTGATA Gene: Desal_0898: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Gene: Desal_0033: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0219: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	Lawsonia intracellularis PHE/MN1-00	Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)

CRON 2.
hysB	Desulfohalobium retbaense DSM 5692	* Desulfomicrobium baculatum DSM 4028 Site: position = -117 score = 4.84648 sequence = GATCGTGATTTTCGATC Gene: Dbac_1970: periplasmic [NiFeSe] hydrogenase, small subunit	* Desulfovibrio desulfuricans G20 Site: position = -217 score = 4.10472 sequence = TATCAGAATTCTTGATA Site: position = -153 score = 4.97165 sequence = GATTGTATTTTTCTATC Gene: Dde_2134: periplasmic [NiFeSe] hydrogenase, small subunit	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00297: periplasmic [NiFeSe] hydrogenase, small subunit	* Desulfovibrio salexigens DSM 2638 Site: position = -160 score = 5.0893 sequence = TATTTGTTTTATCTATA Gene: Desal_2050: periplasmic [NiFeSe] hydrogenase, small subunit	* Desulfovibrio vulgaris Hildenborough Site: position = -147 score = 4.32897 sequence = CATCACCTTTTTCGATG Gene: DVU1917: periplasmic [NiFeSe] hydrogenase, small subunit	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -152 score = 4.77115 sequence = AATCACTTTTTTCTATC Gene: DvMF_0274: periplasmic [NiFeSe] hydrogenase, small subunit	Lawsonia intracellularis PHE/MN1-00	periplasmic [NiFeSe] hydrogenase, small subunit
hysA	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1969: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing	Desulfovibrio desulfuricans G20 Gene: Dde_2135: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00296: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing	Desulfovibrio salexigens DSM 2638 Gene: Desal_2049: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing	Desulfovibrio vulgaris Hildenborough Gene: DVU1918: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0273: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing	Lawsonia intracellularis PHE/MN1-00	periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing

CRON 3.
hrsM	* Desulfohalobium retbaense DSM 5692 Site: position = -275 score = 5.24442 sequence = CATAGATTTTCTCTATA Gene: Dret_2037: transcriptional regulator, LysR family	* Desulfomicrobium baculatum DSM 4028 Site: position = -33 score = 5.24049 sequence = TATCGTTTTCGTCTATA Gene: Dbac_2747: transcriptional regulator, LysR family	Desulfovibrio desulfuricans G20 Gene: Dde_2226: transcriptional regulator, LysR family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio magneticus RS-1 Site: position = -23 score = 5.1231 sequence = GATCAGTTTTTTCGATA Gene: DMR_12480: transcriptional regulator, LysR family	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -28 score = 5.51483 sequence = TATAGATATTTTCGATA Gene: Desal_1213: transcriptional regulator, LysR family	* Desulfovibrio vulgaris Hildenborough Site: position = -29 score = 4.77916 sequence = TATTGGGATATTCGATA Site: position = -20 score = 3.87571 sequence = ATTCGATATATCCTATA Gene: DVU1331: transcriptional regulator, LysR family	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -29 score = 4.50871 sequence = TATCGTTTCCATCAATA Gene: DvMF_0108: transcriptional regulator, LysR family	Lawsonia intracellularis PHE/MN1-00	transcriptional regulator, LysR family
selD	Desulfohalobium retbaense DSM 5692 Gene: Dret_2036: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	* Desulfomicrobium baculatum DSM 4028 Site: position = -132 score = 4.0345 sequence = GATAGAATTTTTCAAAA Gene: Dbac_2746: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio desulfuricans G20 Gene: Dde_2225: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0689: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio magneticus RS-1 Gene: DMR_20900: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02675: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio salexigens DSM 2638 Gene: Desal_0640: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio vulgaris Hildenborough Gene: DVU1332: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0107: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing	Lawsonia intracellularis PHE/MN1-00	Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing
Dret_2035	Desulfohalobium retbaense DSM 5692 Gene: Dret_2035: iron-sulfur cluster-binding protein, putative	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2745: iron-sulfur cluster-binding protein, putative	Desulfovibrio desulfuricans G20 Gene: Dde_2711: iron-sulfur cluster-binding protein, putative	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1835: iron-sulfur cluster-binding protein, putative	Desulfovibrio magneticus RS-1 Gene: DMR_17970: iron-sulfur cluster-binding protein, putative	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02461: iron-sulfur cluster-binding protein, putative	Desulfovibrio salexigens DSM 2638 Gene: Desal_2803: iron-sulfur cluster-binding protein, putative	Desulfovibrio vulgaris Hildenborough Gene: DVU0908: iron-sulfur cluster-binding protein, putative	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1398: iron-sulfur cluster-binding protein, putative	Lawsonia intracellularis PHE/MN1-00	iron-sulfur cluster-binding protein, putative

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HrsM - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --