Regulog HrsM - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - LysR
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | 3 | 1 |
| Desulfomicrobium baculatum DSM 4028 | 7 | 3 |
| Desulfovibrio desulfuricans G20 | 2 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | 1 | 1 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 4 | 3 |
| Desulfovibrio vulgaris Hildenborough | 4 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 4 | 2 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ahpC |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_1862: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Gene: Dret_1861: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
*2
Desulfomicrobium baculatum DSM 4028 Site: position = -36 score = 4.84237 sequence = TATCGTTATCATCAATA Gene: Dbac_2098: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Gene: Dbac_2099: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
|
Gene: Ddes_0602: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
Gene: DMR_07700: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
|
*2
Desulfovibrio salexigens DSM 2638 Site: position = -83 score = 4.73034 sequence = TATCGACTTTTTTGATA Gene: Desal_0898: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) Gene: Desal_0033: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
|
Gene: DvMF_0219: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
|
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) |
| CRON 2. | |||||||||||
| hysB |
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -117 score = 4.84648 sequence = GATCGTGATTTTCGATC Gene: Dbac_1970: periplasmic [NiFeSe] hydrogenase, small subunit |
*
Desulfovibrio desulfuricans G20 Site: position = -217 score = 4.10472 sequence = TATCAGAATTCTTGATA Site: position = -153 score = 4.97165 sequence = GATTGTATTTTTCTATC Gene: Dde_2134: periplasmic [NiFeSe] hydrogenase, small subunit |
|
|
Gene: DESPIG_00297: periplasmic [NiFeSe] hydrogenase, small subunit |
*
Desulfovibrio salexigens DSM 2638 Site: position = -160 score = 5.0893 sequence = TATTTGTTTTATCTATA Gene: Desal_2050: periplasmic [NiFeSe] hydrogenase, small subunit |
*
Desulfovibrio vulgaris Hildenborough Site: position = -147 score = 4.32897 sequence = CATCACCTTTTTCGATG Gene: DVU1917: periplasmic [NiFeSe] hydrogenase, small subunit |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -152 score = 4.77115 sequence = AATCACTTTTTTCTATC Gene: DvMF_0274: periplasmic [NiFeSe] hydrogenase, small subunit |
|
periplasmic [NiFeSe] hydrogenase, small subunit |
| hysA |
|
Gene: Dbac_1969: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
Gene: Dde_2135: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
|
|
Gene: DESPIG_00296: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
Gene: Desal_2049: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
Gene: DVU1918: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
Gene: DvMF_0273: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
|
periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
| CRON 3. | |||||||||||
| hrsM |
*
Desulfohalobium retbaense DSM 5692 Site: position = -275 score = 5.24442 sequence = CATAGATTTTCTCTATA Gene: Dret_2037: transcriptional regulator, LysR family |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -33 score = 5.24049 sequence = TATCGTTTTCGTCTATA Gene: Dbac_2747: transcriptional regulator, LysR family |
Gene: Dde_2226: transcriptional regulator, LysR family |
|
*
Desulfovibrio magneticus RS-1 Site: position = -23 score = 5.1231 sequence = GATCAGTTTTTTCGATA Gene: DMR_12480: transcriptional regulator, LysR family |
|
*
Desulfovibrio salexigens DSM 2638 Site: position = -28 score = 5.51483 sequence = TATAGATATTTTCGATA Gene: Desal_1213: transcriptional regulator, LysR family |
*
Desulfovibrio vulgaris Hildenborough Site: position = -29 score = 4.77916 sequence = TATTGGGATATTCGATA Site: position = -20 score = 3.87571 sequence = ATTCGATATATCCTATA Gene: DVU1331: transcriptional regulator, LysR family |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -29 score = 4.50871 sequence = TATCGTTTCCATCAATA Gene: DvMF_0108: transcriptional regulator, LysR family |
|
transcriptional regulator, LysR family |
| selD |
Gene: Dret_2036: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -132 score = 4.0345 sequence = GATAGAATTTTTCAAAA Gene: Dbac_2746: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: Dde_2225: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: Ddes_0689: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: DMR_20900: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: DESPIG_02675: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: Desal_0640: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: DVU1332: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
Gene: DvMF_0107: Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
|
Selenide,water dikinase (EC 2.7.9.3); selenocysteine-containing |
| Dret_2035 |
Gene: Dret_2035: iron-sulfur cluster-binding protein, putative |
Gene: Dbac_2745: iron-sulfur cluster-binding protein, putative |
Gene: Dde_2711: iron-sulfur cluster-binding protein, putative |
Gene: Ddes_1835: iron-sulfur cluster-binding protein, putative |
Gene: DMR_17970: iron-sulfur cluster-binding protein, putative |
Gene: DESPIG_02461: iron-sulfur cluster-binding protein, putative |
Gene: Desal_2803: iron-sulfur cluster-binding protein, putative |
Gene: DVU0908: iron-sulfur cluster-binding protein, putative |
Gene: DvMF_1398: iron-sulfur cluster-binding protein, putative |
|
iron-sulfur cluster-binding protein, putative |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |