Regulog SahR - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - SahR/SamR
- By TF family - ArsR
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 6 | 4 |
| Desulfovibrio vulgaris str. Miyazaki F | 5 | 3 |
| Desulfovibrio desulfuricans G20 | 8 | 5 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 5 | 3 |
| Desulfovibrio piger ATCC 29098 | 5 | 3 |
| Desulfovibrio salexigens DSM 2638 | 5 | 3 |
| Desulfovibrio magneticus RS-1 | 2 | 1 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 3 | 1 |
| Desulfohalobium retbaense DSM 5692 | 4 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| metT |
Gene: DVU1978: Methionine transporter MetT |
Gene: DvMF_3062: Methionine transporter MetT |
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Desulfovibrio desulfuricans G20 Site: position = -131 score = 5.72692 sequence = TTATCAACTTAGTTTGATAT Gene: Dde_2476: Methionine transporter MetT |
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Gene: DESPIG_01866: Methionine transporter MetT |
Gene: Desal_2013: Methionine transporter MetT |
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Gene: LI0985: Methionine transporter MetT |
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Methionine transporter MetT |
| CRON 2. | |||||||||||
| metE |
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Desulfovibrio vulgaris Hildenborough Site: position = -341 score = 5.33619 sequence = ATATCAGTATTTCCTGATGT Gene: DVU3371: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: DvMF_2035: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Desulfovibrio desulfuricans G20 Site: position = -293 score = 4.43642 sequence = ATATTGATGAATCTTGATAT Gene: Dde_2328: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Desulfovibrio salexigens DSM 2638 Site: position = -282 score = 4.80508 sequence = ATATAACAATATTTTTATAT Site: position = -274 score = 4.2127 sequence = ATATTTTTATATATTGAATT Gene: Desal_0813: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| metF |
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Desulfovibrio vulgaris Hildenborough Site: position = -87 score = 6.39736 sequence = ATATCAATCTATCTTGATAT Gene: DVU0997: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -208 score = 6.57713 sequence = ATATCAAGATAGCTTGATAT Gene: DvMF_3034: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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Desulfovibrio desulfuricans G20 Site: position = -69 score = 4.48738 sequence = ATATTACAATAGGTCGATAT Site: position = -45 score = 6.20848 sequence = ATATAAGGCTATCTTGATAT Gene: Dde_2525: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -80 score = 6.46068 sequence = ATATCAATTTATCTTGATAT Gene: Ddes_2008: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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Desulfovibrio piger ATCC 29098 Site: position = -73 score = 6.23645 sequence = TTATCAAGTTATATTGATAT Gene: DESPIG_02490: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Desal_0814: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CRON 3. | |||||||||||
| bhmT |
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Desulfohalobium retbaense DSM 5692 Site: position = -102 score = 6.27377 sequence = ATATCAAAATATCTTGATAT Gene: Dret_2255: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
| CRON 4. | |||||||||||
| sahR |
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Desulfovibrio vulgaris Hildenborough Site: position = -52 score = 5.91394 sequence = ACATCAAGTTTTCTTGATTT Gene: DVU0606: Predicted regulator of methionine metabolism, ArsR family |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -103 score = 5.30723 sequence = AAATCAAGTTTTCTTGATGT Gene: DvMF_2579: Predicted regulator of methionine metabolism, ArsR family |
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Desulfovibrio desulfuricans G20 Site: position = 63 score = 5.34113 sequence = ACATCAACTTTTCTTGATTC Gene: Dde_3135: Predicted regulator of methionine metabolism, ArsR family |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -57 score = 5.37803 sequence = ATATGCGGATAACTTGATAC Site: position = -35 score = 5.01252 sequence = GTATCAGCATAAATTGATTT Gene: Ddes_0040: Predicted regulator of methionine metabolism, ArsR family |
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Desulfovibrio piger ATCC 29098 Site: position = -83 score = 5.80101 sequence = ATATCCAGATAGGCTGATAT Site: position = -61 score = 4.05588 sequence = GCATCAAGCAAATTTGATAC Gene: DESPIG_01931: Predicted regulator of methionine metabolism, ArsR family |
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Desulfovibrio salexigens DSM 2638 Site: position = -39 score = 3.72898 sequence = ATATAAAGGTTTTGTTATGT Gene: Desal_3078: Predicted regulator of methionine metabolism, ArsR family |
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Desulfovibrio magneticus RS-1 Site: position = -18 score = 6.71464 sequence = ATATCAGGATATCTTGATAT Gene: DMR_43430: Predicted regulator of methionine metabolism, ArsR family |
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Desulfomicrobium baculatum DSM 4028 Site: position = -45 score = 6.71464 sequence = ATATCAGGATATCTTGATAT Gene: Dbac_2305: Predicted regulator of methionine metabolism, ArsR family |
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Desulfohalobium retbaense DSM 5692 Site: position = -172 score = 4.7259 sequence = TTATCAACTTTTTCAGATAT Gene: Dret_2302: Predicted regulator of methionine metabolism, ArsR family |
Predicted regulator of methionine metabolism, ArsR family |
| ahcY |
Gene: DVU0607: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: DvMF_2580: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Dde_3134: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Ddes_0039: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: DESPIG_01930: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Desal_3077: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: DMR_43440: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: LI0670: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Dbac_2304: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Dret_2301: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| metK |
Gene: DVU2449: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: DvMF_2941: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Dde_1496: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Ddes_2287: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: DESPIG_01870: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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Desulfovibrio salexigens DSM 2638 Site: position = -111 score = 4.792 sequence = ATATGCAAATTTATTTATAT Gene: Desal_1278: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: DMR_42050: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: LI0726: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Dbac_2303: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: Dret_2300: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| panC |
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Desulfovibrio vulgaris Hildenborough Site: position = -18 score = 5.77158 sequence = ATATGTGGATAGGTTGATAT Gene: DVU2448: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -18 score = 5.4408 sequence = ATATTCGGATAACTTGATAT Gene: DvMF_2942: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
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Desulfovibrio desulfuricans G20 Site: position = -18 score = 5.86775 sequence = ATATGCGGATACATTGATAT Gene: Dde_1498: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -18 score = 5.79116 sequence = ATATCACAATACCTTGATAT Site: position = -10 score = 4.24755 sequence = ATACCTTGATATGCAGATAT Gene: Ddes_2286: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
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Desulfovibrio piger ATCC 29098 Site: position = -18 score = 6.09451 sequence = ATATCACCATACCTTGATAT Site: position = -10 score = 4.24755 sequence = ATACCTTGATATGCAGATAT Gene: DESPIG_01871: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
Gene: Desal_1279: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
Gene: DMR_42060: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
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Gene: Dbac_1683: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
Gene: Dret_1012: Pantoate--beta-alanine ligase (EC 6.3.2.1) |
Pantoate--beta-alanine ligase (EC 6.3.2.1) |
| Dde_1497 |
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Gene: Dde_1497: Uncharacterized conserved protein |
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Uncharacterized conserved protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |