Regulog Glycine - Desulfovibrionales
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria/delta |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 1 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | ||
| Desulfovibrio desulfuricans G20 | 1 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 4 | 2 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio magneticus RS-1 | ||
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfohalobium retbaense DSM 5692 |
| Genes | Function | ||||||||||
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| CRON 1. | |||||||||||
| glyP |
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Desulfovibrio vulgaris Hildenborough Site: position = -231 score = 60.16 sequence = GCCTCTGGAGAGACC... Site: position = -314 score = 60.64 sequence = GATGACGACAGCAGG... Gene: DVU0724: Sodium/glycine symporter GlyP |
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Desulfovibrio desulfuricans G20 Site: position = -341 score = 52.8 sequence = TGACGACAGCAGGAG... Site: position = -252 score = 67.44 sequence = GACGAGCCTCTGGAG... Gene: Dde_2852: Sodium/glycine symporter GlyP |
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Sodium/glycine symporter GlyP |
| CRON 2. | |||||||||||
| Ddes_0984 |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -238 score = 61.72 sequence = AATGATGACCATGAG... Gene: Ddes_0984: Hypothetical protein |
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Hypothetical protein |
| cycA |
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Gene: Ddes_0983: D-serine/D-alanine/glycine transporter |
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D-serine/D-alanine/glycine transporter |
| CRON 3. | |||||||||||
| grdB |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -637 score = 53.59 sequence = GTTAATGCGTGAGAG... Gene: Ddes_0112: Glycine reductase component B beta subunit (EC 1.21.4.2) / Glycine reductase component B alpha subunit (EC 1.21.4.2) |
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Glycine reductase component B beta subunit (EC 1.21.4.2) / Glycine reductase component B alpha subunit (EC 1.21.4.2) |
| grdE |
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Gene: Ddes_0113: Glycine reductase component B gamma subunit (EC 1.21.4.2); selenocysteine-containing |
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Glycine reductase component B gamma subunit (EC 1.21.4.2); selenocysteine-containing |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |