Regulog SAM - Desulfovibrionales
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Proteobacteria/delta |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 1 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 1 | 1 |
| Desulfovibrio desulfuricans G20 | 1 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 1 | 1 |
| Desulfovibrio magneticus RS-1 | ||
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfohalobium retbaense DSM 5692 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| DVU1170 |
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Desulfovibrio vulgaris Hildenborough Site: position = -372 score = 45.81 sequence = TCACTCATGACGAGG... Gene: DVU1170: Hypothetical protein |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -410 score = 45.04 sequence = CCATTCATGGAGAGA... Gene: DvMF_3066: Hypothetical protein |
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Desulfovibrio desulfuricans G20 Site: position = -291 score = 51.36 sequence = ACTCATGAAGAGGAC... Gene: Dde_2470: Hypothetical protein |
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Desulfovibrio salexigens DSM 2638 Site: position = -317 score = 53.59 sequence = TTACTCATGTAGAGG... Gene: Desal_0862: Hypothetical protein |
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Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |