Regulog DVU3305 - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Fis

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692	1	1
Desulfomicrobium baculatum DSM 4028	8	2
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1	5	2
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638	2	1
Desulfovibrio vulgaris Hildenborough	8	2
Desulfovibrio vulgaris str. Miyazaki F	8	2
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
Dret_0700	* Desulfohalobium retbaense DSM 5692 Site: position = -591 score = 5.11865 sequence = TGTTGCAAAAAACAACG Site: position = -574 score = 5.11865 sequence = CGTTGCAAAAAACAACA Gene: Dret_0700: Ion transport 2 domain protein	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_19690: Ion transport 2 domain protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Ion transport 2 domain protein

CRON 2.
Desal_0383	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -229 score = 5.73942 sequence = CGTTGCAAAAAGCAACA Site: position = -152 score = 5.63082 sequence = TGTTGCAGATAGCAACA Gene: Desal_0383: hypothetical protein	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
Desal_2700	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	2 Desulfovibrio salexigens DSM 2638 Gene: Desal_0382: Citrate transporter Gene: Desal_2700: Citrate transporter	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Citrate transporter

CRON 3.
DVU3302	Desulfohalobium retbaense DSM 5692	* Desulfomicrobium baculatum DSM 4028 Site: position = -220 score = 5.92282 sequence = TGTTGCGTTTTGCAACA Site: position = -144 score = 5.39838 sequence = CGCTGCAATCTGCAACA Gene: Dbac_2669: hypothetical protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio magneticus RS-1 Site: position = -86 score = 5.73942 sequence = TGTTGCAATAAGCAACG Site: position = -41 score = 5.67259 sequence = TGTTGCGTTTCGCAACG Gene: DMR_10820: hypothetical protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -227 score = 5.6965 sequence = TGTTGCATTATGCAGCA Site: position = -146 score = 5.92282 sequence = TGTTGCATATCGCAACA Gene: null: hypothetical protein	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -224 score = 5.71354 sequence = CGTTGCATTTCGCAACG Site: position = -146 score = 5.66558 sequence = CGTTGCACTTTGCAACA Gene: DvMF_2106: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
DVU3301	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2670: hypothetical protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_10830: hypothetical protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU3301: hypothetical protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2105: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
Dbac_2671	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2671: Sulfate permease and related transporters (MFS superfamily)	Desulfovibrio desulfuricans G20 Gene: Dde_3641: Sulfate permease and related transporters (MFS superfamily)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1131: Sulfate permease and related transporters (MFS superfamily)	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Sulfate permease and related transporters (MFS superfamily)
DVU3300	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2672: hypothetical protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_10840: hypothetical protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU3300: hypothetical protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2104: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
DVU3299	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2673: TSUP family transporter	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_10850: TSUP family transporter	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU3299: TSUP family transporter	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2103: TSUP family transporter	Lawsonia intracellularis PHE/MN1-00	TSUP family transporter
DVU3298	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU3298: universal stress protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2102: universal stress protein	Lawsonia intracellularis PHE/MN1-00	universal stress protein

CRON 4.
DVU3303	Desulfohalobium retbaense DSM 5692	* Desulfomicrobium baculatum DSM 4028 Site: position = -58 score = 5.92282 sequence = TGTTGCAAAACGCAACA Site: position = -134 score = 5.39838 sequence = TGTTGCAGATTGCAGCG Gene: Dbac_2668: ATP-dependent protease, response regulator receiver protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio magneticus RS-1 Site: position = -148 score = 5.67259 sequence = CGTTGCGAAACGCAACA Site: position = -103 score = 5.73942 sequence = CGTTGCTTATTGCAACA Gene: DMR_10810: ATP-dependent protease, response regulator receiver protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -9 score = 5.6965 sequence = TGCTGCATAATGCAACA Site: position = -90 score = 5.92282 sequence = TGTTGCGATATGCAACA Gene: DVU3303: ATP-dependent protease, response regulator receiver protein	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -154 score = 5.66558 sequence = TGTTGCAAAGTGCAACG Site: position = -76 score = 5.71354 sequence = CGTTGCGAAATGCAACG Gene: DvMF_2107: ATP-dependent protease, response regulator receiver protein	Lawsonia intracellularis PHE/MN1-00	ATP-dependent protease, response regulator receiver protein
DVU3304	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2667: integral membrane sensor signal transduction histidine kinase	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_10790: integral membrane sensor signal transduction histidine kinase	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0386: integral membrane sensor signal transduction histidine kinase	Desulfovibrio vulgaris Hildenborough Gene: null: integral membrane sensor signal transduction histidine kinase	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2108: integral membrane sensor signal transduction histidine kinase	Lawsonia intracellularis PHE/MN1-00	integral membrane sensor signal transduction histidine kinase
DVU3305	Desulfohalobium retbaense DSM 5692 Gene: Dret_0701: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2666: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_10800: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0385: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio vulgaris Hildenborough Gene: DVU3305: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2109: two component, sigma54 specific, transcriptional regulator, Fis family	Lawsonia intracellularis PHE/MN1-00	two component, sigma54 specific, transcriptional regulator, Fis family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DVU3305 - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --