Regulog DVU3305 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | 1 | 1 |
| Desulfomicrobium baculatum DSM 4028 | 8 | 2 |
| Desulfovibrio desulfuricans G20 | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | 5 | 2 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 2 | 1 |
| Desulfovibrio vulgaris Hildenborough | 8 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 8 | 2 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| Dret_0700 |
*
Desulfohalobium retbaense DSM 5692 Site: position = -591 score = 5.11865 sequence = TGTTGCAAAAAACAACG Site: position = -574 score = 5.11865 sequence = CGTTGCAAAAAACAACA Gene: Dret_0700: Ion transport 2 domain protein |
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Gene: DMR_19690: Ion transport 2 domain protein |
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Ion transport 2 domain protein |
| CRON 2. | |||||||||||
| Desal_0383 |
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Desulfovibrio salexigens DSM 2638 Site: position = -229 score = 5.73942 sequence = CGTTGCAAAAAGCAACA Site: position = -152 score = 5.63082 sequence = TGTTGCAGATAGCAACA Gene: Desal_0383: hypothetical protein |
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hypothetical protein |
| Desal_2700 |
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2
Desulfovibrio salexigens DSM 2638 Gene: Desal_0382: Citrate transporter Gene: Desal_2700: Citrate transporter |
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Citrate transporter |
| CRON 3. | |||||||||||
| DVU3302 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -220 score = 5.92282 sequence = TGTTGCGTTTTGCAACA Site: position = -144 score = 5.39838 sequence = CGCTGCAATCTGCAACA Gene: Dbac_2669: hypothetical protein |
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Desulfovibrio magneticus RS-1 Site: position = -86 score = 5.73942 sequence = TGTTGCAATAAGCAACG Site: position = -41 score = 5.67259 sequence = TGTTGCGTTTCGCAACG Gene: DMR_10820: hypothetical protein |
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Desulfovibrio vulgaris Hildenborough Site: position = -227 score = 5.6965 sequence = TGTTGCATTATGCAGCA Site: position = -146 score = 5.92282 sequence = TGTTGCATATCGCAACA Gene: null: hypothetical protein |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -224 score = 5.71354 sequence = CGTTGCATTTCGCAACG Site: position = -146 score = 5.66558 sequence = CGTTGCACTTTGCAACA Gene: DvMF_2106: hypothetical protein |
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hypothetical protein |
| DVU3301 |
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Gene: Dbac_2670: hypothetical protein |
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Gene: DMR_10830: hypothetical protein |
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Gene: DVU3301: hypothetical protein |
Gene: DvMF_2105: hypothetical protein |
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hypothetical protein |
| Dbac_2671 |
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Gene: Dbac_2671: Sulfate permease and related transporters (MFS superfamily) |
Gene: Dde_3641: Sulfate permease and related transporters (MFS superfamily) |
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Gene: Desal_1131: Sulfate permease and related transporters (MFS superfamily) |
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Sulfate permease and related transporters (MFS superfamily) |
| DVU3300 |
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Gene: Dbac_2672: hypothetical protein |
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Gene: DMR_10840: hypothetical protein |
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Gene: DVU3300: hypothetical protein |
Gene: DvMF_2104: hypothetical protein |
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hypothetical protein |
| DVU3299 |
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Gene: Dbac_2673: TSUP family transporter |
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Gene: DMR_10850: TSUP family transporter |
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Gene: DVU3299: TSUP family transporter |
Gene: DvMF_2103: TSUP family transporter |
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TSUP family transporter |
| DVU3298 |
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Gene: DVU3298: universal stress protein |
Gene: DvMF_2102: universal stress protein |
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universal stress protein |
| CRON 4. | |||||||||||
| DVU3303 |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -58 score = 5.92282 sequence = TGTTGCAAAACGCAACA Site: position = -134 score = 5.39838 sequence = TGTTGCAGATTGCAGCG Gene: Dbac_2668: ATP-dependent protease, response regulator receiver protein |
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Desulfovibrio magneticus RS-1 Site: position = -148 score = 5.67259 sequence = CGTTGCGAAACGCAACA Site: position = -103 score = 5.73942 sequence = CGTTGCTTATTGCAACA Gene: DMR_10810: ATP-dependent protease, response regulator receiver protein |
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Desulfovibrio vulgaris Hildenborough Site: position = -9 score = 5.6965 sequence = TGCTGCATAATGCAACA Site: position = -90 score = 5.92282 sequence = TGTTGCGATATGCAACA Gene: DVU3303: ATP-dependent protease, response regulator receiver protein |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -154 score = 5.66558 sequence = TGTTGCAAAGTGCAACG Site: position = -76 score = 5.71354 sequence = CGTTGCGAAATGCAACG Gene: DvMF_2107: ATP-dependent protease, response regulator receiver protein |
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ATP-dependent protease, response regulator receiver protein |
| DVU3304 |
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Gene: Dbac_2667: integral membrane sensor signal transduction histidine kinase |
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Gene: DMR_10790: integral membrane sensor signal transduction histidine kinase |
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Gene: Desal_0386: integral membrane sensor signal transduction histidine kinase |
Gene: null: integral membrane sensor signal transduction histidine kinase |
Gene: DvMF_2108: integral membrane sensor signal transduction histidine kinase |
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integral membrane sensor signal transduction histidine kinase |
| DVU3305 |
Gene: Dret_0701: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Dbac_2666: two component, sigma54 specific, transcriptional regulator, Fis family |
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Gene: DMR_10800: two component, sigma54 specific, transcriptional regulator, Fis family |
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Gene: Desal_0385: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DVU3305: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DvMF_2109: two component, sigma54 specific, transcriptional regulator, Fis family |
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two component, sigma54 specific, transcriptional regulator, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |