Regulon of RpoN in Lawsonia intracellularis PHE/MN1-00
| Regulator type: | Transcription factor |
| TF locus tag: | LI0457 |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Regulog: | RpoN - Desulfovibrionales |
| Statistics of regulated genes: | |
| - Genes | 39 |
| - Operons | 19 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Sigma54
- By pathway - Zinc homeostasis
- By pathway - Nitrogen metabolism
- By pathway - Motility
- By pathway - Metabolite transport
- By pathway - Intercellular adhesion
- By pathway - Cell wall metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -80
Score: 5.1 Sequence: TTTGGCATGTGCATTGCTT
Locus tag: LI0700
Name: null Funciton: TPR repeat-containing protein |
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TPR repeat-containing protein
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Position: -77
Score: 5.2 Sequence: CTTGGCATGGCTTCTGCTT
Locus tag: LI0348
Name: flgE Funciton: Flagellar hook protein FlgE |
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flgE
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Flagellar hook protein FlgE
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Position: -62
Score: 3.9 Sequence: TAAGGCCTAAAATTTGCAT
Locus tag: LI0507
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -44
Score: 4.5 Sequence: TTTGGAACACTCCTTGTAC
Locus tag: LI0568
Name: fliK Funciton: Flagellar hook-length control protein FliK |
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fliK
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Flagellar hook-length control protein FliK
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Position: -82
Score: 4.4 Sequence: CTTGGCACATAACATGCAT
Locus tag: LI0567
Name: flgD Funciton: Flagellar basal-body rod modification protein FlgD
Locus tag: LI0566
Name: flgE Funciton: Flagellar hook protein FlgE |
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flgD
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Flagellar basal-body rod modification protein FlgD
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flgE
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Flagellar hook protein FlgE
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Position: -62
Score: 3.8 Sequence: TTTGGTATAAAAGCTGCAT
Locus tag: LI0746
Name: DVU0518 Funciton: FlgN family protein
Locus tag: LI0747
Name: flgK Funciton: flagellar hook-associated protein FlgK
Locus tag: LI0748
Name: flgL Funciton: Flagellar hook-associated protein FlgL
Locus tag: LI0749
Name: fliW Funciton: Flagellar assembly factor FliW |
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DVU0518
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FlgN family protein
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flgK
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flagellar hook-associated protein FlgK
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flgL
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Flagellar hook-associated protein FlgL
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fliW
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Flagellar assembly factor FliW
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Position: -40
Score: 4.3 Sequence: TTTGGATCGTTTATTGCAT
Locus tag: LI0627
Name: lpxC Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) |
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lpxC
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UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
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Position: -56
Score: 4.2 Sequence: ATTGGTATATCCATTGCAT
Locus tag: LI0570
Name: fliC Funciton: Flagellin protein FlaA |
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fliC
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Flagellin protein FlaA
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Position: -60
Score: 4.4 Sequence: AATGGCTCACCTCTTGCAA
Locus tag: LI1017
Name: null Funciton: hypothetical protein
Locus tag: LI1016
Name: null Funciton: hypothetical protein |
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hypothetical protein
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hypothetical protein
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Position: -60
Score: 3.5 Sequence: AATAGTATGAATATTGCAT
Locus tag: LI0899
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -193
Score: 4.7 Sequence: TTTGGCATAGTCTCTGCAG
Locus tag: LI1157
Name: null Funciton: Type III secretion chaperone protein for YopD (SycD)
Locus tag: LI1158
Name: null Funciton: Type III secretion host injection protein (YopB)
Locus tag: LI1159
Name: null Funciton: hypothetical protein |
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Type III secretion chaperone protein for YopD (SycD)
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Type III secretion host injection protein (YopB)
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hypothetical protein
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Position: -151
Score: 4.6 Sequence: ATTGGTATACTCTTTGCTG
Locus tag: LI1156
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -57
Score: 4.4 Sequence: TTAGGCATAGTTTTTGATT
Locus tag: LI0277
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -147
Score: 4.6 Sequence: CTTGGTATAACTTTTGCTA
Locus tag: LI0740
Name: flgF Funciton: Flagellar basal-body rod protein FlgF
Locus tag: LI0741
Name: flgG Funciton: Flagellar basal-body rod protein FlgG
Locus tag: LI0742
Name: flgA Funciton: Flagellar basal-body P-ring formation protein FlgA
Locus tag: LI0743
Name: flgH Funciton: Flagellar L-ring protein FlgH
Locus tag: LI0744
Name: flgI Funciton: Flagellar P-ring protein FlgI
Locus tag: LI0745
Name: flgJ Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) |
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flgF
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Flagellar basal-body rod protein FlgF
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flgG
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Flagellar basal-body rod protein FlgG
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flgA
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Flagellar basal-body P-ring formation protein FlgA
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flgH
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Flagellar L-ring protein FlgH
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flgI
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Flagellar P-ring protein FlgI
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flgJ
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Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
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Position: -73
Score: 4.3 Sequence: TTAGGAATATTTTTTGCAT
Locus tag: LI1060
Name: fliJ Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: LI1061
Name: flbB Funciton: Flagellar protein FlbB
Locus tag: LI1062
Name: truA Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70) |
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fliJ
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Flagellar biosynthesis chaperone FliJ
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flbB
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Flagellar protein FlbB
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truA
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tRNA pseudouridine synthase A (EC 4.2.1.70)
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Position: -108
Score: 4.4 Sequence: ATAGGCATGCAGATTGCAT
Locus tag: LI0856
Name: fliG Funciton: Flagellar motor switch protein FliG
Locus tag: LI0855
Name: fliH Funciton: Flagellar assembly protein FliH
Locus tag: LI0854
Name: fliI Funciton: flagellar protein export ATPase FliI |
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fliG
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Flagellar motor switch protein FliG
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fliH
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Flagellar assembly protein FliH
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fliI
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flagellar protein export ATPase FliI
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Position: -68
Score: 5 Sequence: TATGGCATATGTTTTGCTT
Locus tag: LI0860
Name: flgB Funciton: Flagellar basal-body rod protein FlgB
Locus tag: LI0859
Name: flgC Funciton: Flagellar basal-body rod protein FlgC
Locus tag: LI0858
Name: fliE Funciton: Flagellar hook-basal body complex protein FliE
Locus tag: LI0857
Name: fliF Funciton: Flagellar M-ring protein FliF |
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flgB
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Flagellar basal-body rod protein FlgB
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flgC
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Flagellar basal-body rod protein FlgC
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fliE
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Flagellar hook-basal body complex protein FliE
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fliF
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Flagellar M-ring protein FliF
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Position: -53
Score: 5.3 Sequence: CTTGGCAAGCTTTTTGCTT
Locus tag: LI0887
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -61
Score: 4.7 Sequence: TTTGGCACTTTATTTGCTG
Locus tag: LI0211
Name: fliD Funciton: Flagellar hook-associated protein FliD
Locus tag: LI0210
Name: fliS Funciton: Flagellin-specific chaperone FliS |
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fliD
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Flagellar hook-associated protein FliD
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fliS
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Flagellin-specific chaperone FliS
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |