Regulon of RpoN in Lawsonia intracellularis PHE/MN1-00

Properties
Regulator type:	Transcription factor
TF locus tag:	LI0457
Regulator family:	Sigma54
Regulation mode:
Biological process:	Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog:	RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes	39
- Operons	19
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 487 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Sigma54
By pathway - Zinc homeostasis
By pathway - Nitrogen metabolism
By pathway - Motility
By pathway - Metabolite transport
By pathway - Intercellular adhesion
By pathway - Cell wall metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -80 Score: 5.1 Sequence: TTTGGCATGTGCATTGCTT Locus tag: LI0700 Name: null Funciton: TPR repeat-containing protein
	LI0700		TPR repeat-containing protein
Position: -77 Score: 5.2 Sequence: CTTGGCATGGCTTCTGCTT Locus tag: LI0348 Name: flgE Funciton: Flagellar hook protein FlgE
	LI0348	flgE	Flagellar hook protein FlgE
Position: -62 Score: 3.9 Sequence: TAAGGCCTAAAATTTGCAT Locus tag: LI0507 Name: null Funciton: hypothetical protein
	LI0507		hypothetical protein
Position: -44 Score: 4.5 Sequence: TTTGGAACACTCCTTGTAC Locus tag: LI0568 Name: fliK Funciton: Flagellar hook-length control protein FliK
	LI0568	fliK	Flagellar hook-length control protein FliK
Position: -82 Score: 4.4 Sequence: CTTGGCACATAACATGCAT Locus tag: LI0567 Name: flgD Funciton: Flagellar basal-body rod modification protein FlgD Locus tag: LI0566 Name: flgE Funciton: Flagellar hook protein FlgE
	LI0567	flgD	Flagellar basal-body rod modification protein FlgD
	LI0566	flgE	Flagellar hook protein FlgE
Position: -62 Score: 3.8 Sequence: TTTGGTATAAAAGCTGCAT Locus tag: LI0746 Name: DVU0518 Funciton: FlgN family protein Locus tag: LI0747 Name: flgK Funciton: flagellar hook-associated protein FlgK Locus tag: LI0748 Name: flgL Funciton: Flagellar hook-associated protein FlgL Locus tag: LI0749 Name: fliW Funciton: Flagellar assembly factor FliW
	LI0746	DVU0518	FlgN family protein
	LI0747	flgK	flagellar hook-associated protein FlgK
	LI0748	flgL	Flagellar hook-associated protein FlgL
	LI0749	fliW	Flagellar assembly factor FliW
Position: -40 Score: 4.3 Sequence: TTTGGATCGTTTATTGCAT Locus tag: LI0627 Name: lpxC Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
	LI0627	lpxC	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Position: -56 Score: 4.2 Sequence: ATTGGTATATCCATTGCAT Locus tag: LI0570 Name: fliC Funciton: Flagellin protein FlaA
	LI0570	fliC	Flagellin protein FlaA
Position: -60 Score: 4.4 Sequence: AATGGCTCACCTCTTGCAA Locus tag: LI1017 Name: null Funciton: hypothetical protein Locus tag: LI1016 Name: null Funciton: hypothetical protein
	LI1017		hypothetical protein
	LI1016		hypothetical protein
Position: -60 Score: 3.5 Sequence: AATAGTATGAATATTGCAT Locus tag: LI0899 Name: null Funciton: hypothetical protein
	LI0899		hypothetical protein
Position: -193 Score: 4.7 Sequence: TTTGGCATAGTCTCTGCAG Locus tag: LI1157 Name: null Funciton: Type III secretion chaperone protein for YopD (SycD) Locus tag: LI1158 Name: null Funciton: Type III secretion host injection protein (YopB) Locus tag: LI1159 Name: null Funciton: hypothetical protein
	LI1157		Type III secretion chaperone protein for YopD (SycD)
	LI1158		Type III secretion host injection protein (YopB)
	LI1159		hypothetical protein
Position: -151 Score: 4.6 Sequence: ATTGGTATACTCTTTGCTG Locus tag: LI1156 Name: null Funciton: hypothetical protein
	LI1156		hypothetical protein
Position: -57 Score: 4.4 Sequence: TTAGGCATAGTTTTTGATT Locus tag: LI0277 Name: null Funciton: hypothetical protein
	LI0277		hypothetical protein
Position: -147 Score: 4.6 Sequence: CTTGGTATAACTTTTGCTA Locus tag: LI0740 Name: flgF Funciton: Flagellar basal-body rod protein FlgF Locus tag: LI0741 Name: flgG Funciton: Flagellar basal-body rod protein FlgG Locus tag: LI0742 Name: flgA Funciton: Flagellar basal-body P-ring formation protein FlgA Locus tag: LI0743 Name: flgH Funciton: Flagellar L-ring protein FlgH Locus tag: LI0744 Name: flgI Funciton: Flagellar P-ring protein FlgI Locus tag: LI0745 Name: flgJ Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
	LI0740	flgF	Flagellar basal-body rod protein FlgF
	LI0741	flgG	Flagellar basal-body rod protein FlgG
	LI0742	flgA	Flagellar basal-body P-ring formation protein FlgA
	LI0743	flgH	Flagellar L-ring protein FlgH
	LI0744	flgI	Flagellar P-ring protein FlgI
	LI0745	flgJ	Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Position: -73 Score: 4.3 Sequence: TTAGGAATATTTTTTGCAT Locus tag: LI1060 Name: fliJ Funciton: Flagellar biosynthesis chaperone FliJ Locus tag: LI1061 Name: flbB Funciton: Flagellar protein FlbB Locus tag: LI1062 Name: truA Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
	LI1060	fliJ	Flagellar biosynthesis chaperone FliJ
	LI1061	flbB	Flagellar protein FlbB
	LI1062	truA	tRNA pseudouridine synthase A (EC 4.2.1.70)
Position: -108 Score: 4.4 Sequence: ATAGGCATGCAGATTGCAT Locus tag: LI0856 Name: fliG Funciton: Flagellar motor switch protein FliG Locus tag: LI0855 Name: fliH Funciton: Flagellar assembly protein FliH Locus tag: LI0854 Name: fliI Funciton: flagellar protein export ATPase FliI
	LI0856	fliG	Flagellar motor switch protein FliG
	LI0855	fliH	Flagellar assembly protein FliH
	LI0854	fliI	flagellar protein export ATPase FliI
Position: -68 Score: 5 Sequence: TATGGCATATGTTTTGCTT Locus tag: LI0860 Name: flgB Funciton: Flagellar basal-body rod protein FlgB Locus tag: LI0859 Name: flgC Funciton: Flagellar basal-body rod protein FlgC Locus tag: LI0858 Name: fliE Funciton: Flagellar hook-basal body complex protein FliE Locus tag: LI0857 Name: fliF Funciton: Flagellar M-ring protein FliF
	LI0860	flgB	Flagellar basal-body rod protein FlgB
	LI0859	flgC	Flagellar basal-body rod protein FlgC
	LI0858	fliE	Flagellar hook-basal body complex protein FliE
	LI0857	fliF	Flagellar M-ring protein FliF
Position: -53 Score: 5.3 Sequence: CTTGGCAAGCTTTTTGCTT Locus tag: LI0887 Name: null Funciton: hypothetical protein
	LI0887		hypothetical protein
Position: -61 Score: 4.7 Sequence: TTTGGCACTTTATTTGCTG Locus tag: LI0211 Name: fliD Funciton: Flagellar hook-associated protein FliD Locus tag: LI0210 Name: fliS Funciton: Flagellin-specific chaperone FliS
	LI0211	fliD	Flagellar hook-associated protein FliD
	LI0210	fliS	Flagellin-specific chaperone FliS

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of RpoN in Lawsonia intracellularis PHE/MN1-00

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --