Draft regulons reconstructed by automated conservative propagation
| Template (reference) regulons | Propagated regulons | |||||
|---|---|---|---|---|---|---|
| Regulog collection | Genomes | TF regulons | Taxonomic group | Genomes | TF regulons | |
| Thermotogales | 11 | 245 | ➠ | Thermotogales | 11 | 223 |
| Genomes | Regulons | Sites | |
|---|---|---|---|
| * | Fervidobacterium nodosum Rt17-B1 | 11 | 27 |
| * | Petrotoga mobilis SJ95 | 10 | 18 |
| * | Thermosipho africanus TCF52B | 14 | 35 |
| * | Thermosipho melanesiensis BI429 | 13 | 24 |
| * | Thermotoga lettingae TMO | 21 | 37 |
| * | Thermotoga maritima MSB8 | 29 | 77 |
| * | Thermotoga naphthophila RKU-10 | 31 | 76 |
| * | Thermotoga neapolitana DSM 4359 | 28 | 64 |
| * | Thermotoga petrophila RKU-1 | 29 | 77 |
| * | Thermotoga sp. RQ2 | 27 | 78 |
| * | Thermotogales bacterium TBF 19.5.1 | 10 | 18 |
| * | - reference regulons from this genome have been used as a template for the conservative propagation |
Genomic distribution of propagated regulons
| Reference regulog | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| AraR | - | - | - | - |
2
AraR
Thermotoga lettingae TMO |
2
AraR
Thermotoga maritima MSB8 |
3
AraR
Thermotoga naphthophila RKU-10 |
2
AraR
Thermotoga neapolitana DSM 4359 |
5
AraR
Thermotoga petrophila RKU-1 |
5
AraR
Thermotoga sp. RQ2 |
- |
| ArgR | - | - | - | - | - |
2
ArgR
Thermotoga maritima MSB8 |
2
ArgR
Thermotoga naphthophila RKU-10 |
2
ArgR
Thermotoga neapolitana DSM 4359 |
2
ArgR
Thermotoga petrophila RKU-1 |
2
ArgR
Thermotoga sp. RQ2 |
- |
| BglR | - | - | - | - |
2
BglR
Thermotoga lettingae TMO |
1
BglR
Thermotoga maritima MSB8 |
1
BglR
Thermotoga naphthophila RKU-10 |
1
BglR
Thermotoga neapolitana DSM 4359 |
- |
1
BglR
Thermotoga sp. RQ2 |
- |
| CelR |
1
CelR
Fervidobacterium nodosum Rt17-B1 |
- | - | - |
1
CelR
Thermotoga lettingae TMO |
7
CelR
Thermotoga maritima MSB8 |
4
CelR
Thermotoga naphthophila RKU-10 |
4
CelR
Thermotoga neapolitana DSM 4359 |
4
CelR
Thermotoga petrophila RKU-1 |
7
CelR
Thermotoga sp. RQ2 |
- |
| ChiR | - | - | - |
1
ChiR
Thermosipho melanesiensis BI429 |
1
ChiR
Thermotoga lettingae TMO |
1
ChiR
Thermotoga maritima MSB8 |
1
ChiR
Thermotoga naphthophila RKU-10 |
1
ChiR
Thermotoga neapolitana DSM 4359 |
1
ChiR
Thermotoga petrophila RKU-1 |
1
ChiR
Thermotoga sp. RQ2 |
- |
| Fur |
1
Fur
Fervidobacterium nodosum Rt17-B1 |
- |
3
Fur
Thermosipho africanus TCF52B |
1
Fur
Thermosipho melanesiensis BI429 |
1
Fur
Thermotoga lettingae TMO |
5
Fur
Thermotoga maritima MSB8 |
3
Fur
Thermotoga naphthophila RKU-10 |
2
Fur
Thermotoga neapolitana DSM 4359 |
4
Fur
Thermotoga petrophila RKU-1 |
4
Fur
Thermotoga sp. RQ2 |
1
Fur
Thermotogales bacterium TBF 19.5.1 |
| GalR |
2
GalR
Fervidobacterium nodosum Rt17-B1 |
1
GalR
Petrotoga mobilis SJ95 |
1
GalR
Thermosipho africanus TCF52B |
- |
3
GalR
Thermotoga lettingae TMO |
2
GalR
Thermotoga maritima MSB8 |
2
GalR
Thermotoga naphthophila RKU-10 |
2
GalR
Thermotoga neapolitana DSM 4359 |
2
GalR
Thermotoga petrophila RKU-1 |
2
GalR
Thermotoga sp. RQ2 |
- |
| GloR | - |
1
GloR
Petrotoga mobilis SJ95 |
- | - |
1
GloR
Thermotoga lettingae TMO |
2
GloR
Thermotoga maritima MSB8 |
2
GloR
Thermotoga naphthophila RKU-10 |
- | - |
2
GloR
Thermotoga sp. RQ2 |
- |
| GluR | - | - | - | - | - | - |
2
GluR
Thermotoga naphthophila RKU-10 |
1
GluR
Thermotoga neapolitana DSM 4359 |
1
GluR
Thermotoga petrophila RKU-1 |
2
GluR
Thermotoga sp. RQ2 |
- |
| HcpR |
2
HcpR
Fervidobacterium nodosum Rt17-B1 |
2
HcpR
Petrotoga mobilis SJ95 |
2
HcpR
Thermosipho africanus TCF52B |
1
HcpR
Thermosipho melanesiensis BI429 |
2
HcpR
Thermotoga lettingae TMO |
2
HcpR
Thermotoga maritima MSB8 |
2
HcpR
Thermotoga naphthophila RKU-10 |
1
HcpR
Thermotoga neapolitana DSM 4359 |
2
HcpR
Thermotoga petrophila RKU-1 |
2
HcpR
Thermotoga sp. RQ2 |
2
HcpR
Thermotogales bacterium TBF 19.5.1 |
| HrcA |
6
HrcA
Fervidobacterium nodosum Rt17-B1 |
3
HrcA
Petrotoga mobilis SJ95 |
4
HrcA
Thermosipho africanus TCF52B |
4
HrcA
Thermosipho melanesiensis BI429 |
3
HrcA
Thermotoga lettingae TMO |
4
HrcA
Thermotoga maritima MSB8 |
5
HrcA
Thermotoga naphthophila RKU-10 |
5
HrcA
Thermotoga neapolitana DSM 4359 |
5
HrcA
Thermotoga petrophila RKU-1 |
4
HrcA
Thermotoga sp. RQ2 |
3
HrcA
Thermotogales bacterium TBF 19.5.1 |
| IolR | - | - | - | - | - |
1
IolR
Thermotoga maritima MSB8 |
1
IolR
Thermotoga naphthophila RKU-10 |
1
IolR
Thermotoga neapolitana DSM 4359 |
1
IolR
Thermotoga petrophila RKU-1 |
- | - |
| KdgR | - | - | - | - | - |
6
KdgR
Thermotoga maritima MSB8 |
6
KdgR
Thermotoga naphthophila RKU-10 |
4
KdgR
Thermotoga neapolitana DSM 4359 |
6
KdgR
Thermotoga petrophila RKU-1 |
4
KdgR
Thermotoga sp. RQ2 |
- |
| ManR | - | - | - | - | - |
2
ManR
Thermotoga maritima MSB8 |
1
ManR
Thermotoga naphthophila RKU-10 |
1
ManR
Thermotoga neapolitana DSM 4359 |
1
ManR
Thermotoga petrophila RKU-1 |
2
ManR
Thermotoga sp. RQ2 |
- |
| NiaR | - | - |
1
NiaR
Thermosipho africanus TCF52B |
1
NiaR
Thermosipho melanesiensis BI429 |
1
NiaR
Thermotoga lettingae TMO |
1
NiaR
Thermotoga maritima MSB8 |
1
NiaR
Thermotoga naphthophila RKU-10 |
1
NiaR
Thermotoga neapolitana DSM 4359 |
1
NiaR
Thermotoga petrophila RKU-1 |
1
NiaR
Thermotoga sp. RQ2 |
- |
| NrdR |
1
NrdR
Fervidobacterium nodosum Rt17-B1 |
2
NrdR
Petrotoga mobilis SJ95 |
1
NrdR
Thermosipho africanus TCF52B |
1
NrdR
Thermosipho melanesiensis BI429 |
1
NrdR
Thermotoga lettingae TMO |
4
NrdR
Thermotoga maritima MSB8 |
4
NrdR
Thermotoga naphthophila RKU-10 |
4
NrdR
Thermotoga neapolitana DSM 4359 |
4
NrdR
Thermotoga petrophila RKU-1 |
4
NrdR
Thermotoga sp. RQ2 |
1
NrdR
Thermotogales bacterium TBF 19.5.1 |
| PuuR |
1
PuuR
Fervidobacterium nodosum Rt17-B1 |
- |
1
PuuR
Thermosipho africanus TCF52B |
1
PuuR
Thermosipho melanesiensis BI429 |
1
PuuR
Thermotoga lettingae TMO |
1
PuuR
Thermotoga maritima MSB8 |
1
PuuR
Thermotoga naphthophila RKU-10 |
1
PuuR
Thermotoga neapolitana DSM 4359 |
1
PuuR
Thermotoga petrophila RKU-1 |
1
PuuR
Thermotoga sp. RQ2 |
- |
| RbsR | - |
1
RbsR
Petrotoga mobilis SJ95 |
1
RbsR
Thermosipho africanus TCF52B |
- |
1
RbsR
Thermotoga lettingae TMO |
1
RbsR
Thermotoga maritima MSB8 |
1
RbsR
Thermotoga naphthophila RKU-10 |
- |
1
RbsR
Thermotoga petrophila RKU-1 |
- |
1
RbsR
Thermotogales bacterium TBF 19.5.1 |
| Rex |
7
Rex
Fervidobacterium nodosum Rt17-B1 |
4
Rex
Petrotoga mobilis SJ95 |
8
Rex
Thermosipho africanus TCF52B |
7
Rex
Thermosipho melanesiensis BI429 |
5
Rex
Thermotoga lettingae TMO |
9
Rex
Thermotoga maritima MSB8 |
9
Rex
Thermotoga naphthophila RKU-10 |
9
Rex
Thermotoga neapolitana DSM 4359 |
10
Rex
Thermotoga petrophila RKU-1 |
10
Rex
Thermotoga sp. RQ2 |
4
Rex
Thermotogales bacterium TBF 19.5.1 |
| Rex1 |
2
Rex1
Fervidobacterium nodosum Rt17-B1 |
1
Rex1
Petrotoga mobilis SJ95 |
1
Rex1
Thermosipho africanus TCF52B |
1
Rex1
Thermosipho melanesiensis BI429 |
2
Rex1
Thermotoga lettingae TMO |
1
Rex1
Thermotoga maritima MSB8 |
1
Rex1
Thermotoga naphthophila RKU-10 |
1
Rex1
Thermotoga neapolitana DSM 4359 |
1
Rex1
Thermotoga petrophila RKU-1 |
1
Rex1
Thermotoga sp. RQ2 |
1
Rex1
Thermotogales bacterium TBF 19.5.1 |
| RhaR | - | - | - | - | - |
3
RhaR
Thermotoga maritima MSB8 |
3
RhaR
Thermotoga naphthophila RKU-10 |
3
RhaR
Thermotoga neapolitana DSM 4359 |
3
RhaR
Thermotoga petrophila RKU-1 |
- | - |
| TM0766 |
1
TM0766
Fervidobacterium nodosum Rt17-B1 |
- |
1
TM0766
Thermosipho africanus TCF52B |
1
TM0766
Thermosipho melanesiensis BI429 |
1
TM0766
Thermotoga lettingae TMO |
1
TM0766
Thermotoga maritima MSB8 |
1
TM0766
Thermotoga naphthophila RKU-10 |
- |
1
TM0766
Thermotoga petrophila RKU-1 |
1
TM0766
Thermotoga sp. RQ2 |
- |
| TM1030 | - | - | - | - |
1
TM1030
Thermotoga lettingae TMO |
1
TM1030
Thermotoga maritima MSB8 |
1
TM1030
Thermotoga naphthophila RKU-10 |
1
TM1030
Thermotoga neapolitana DSM 4359 |
1
TM1030
Thermotoga petrophila RKU-1 |
1
TM1030
Thermotoga sp. RQ2 |
- |
| TreR |
2
TreR
Fervidobacterium nodosum Rt17-B1 |
- |
2
TreR
Thermosipho africanus TCF52B |
2
TreR
Thermosipho melanesiensis BI429 |
1
TreR
Thermotoga lettingae TMO |
1
TreR
Thermotoga maritima MSB8 |
2
TreR
Thermotoga naphthophila RKU-10 |
1
TreR
Thermotoga neapolitana DSM 4359 |
2
TreR
Thermotoga petrophila RKU-1 |
2
TreR
Thermotoga sp. RQ2 |
2
TreR
Thermotogales bacterium TBF 19.5.1 |
| UctR | - | - | - | - | - |
1
UctR
Thermotoga maritima MSB8 |
1
UctR
Thermotoga naphthophila RKU-10 |
1
UctR
Thermotoga neapolitana DSM 4359 |
1
UctR
Thermotoga petrophila RKU-1 |
1
UctR
Thermotoga sp. RQ2 |
- |
| UgpR | - | - |
1
UgpR
Thermosipho africanus TCF52B |
1
UgpR
Thermosipho melanesiensis BI429 |
1
UgpR
Thermotoga lettingae TMO |
1
UgpR
Thermotoga maritima MSB8 |
1
UgpR
Thermotoga naphthophila RKU-10 |
1
UgpR
Thermotoga neapolitana DSM 4359 |
1
UgpR
Thermotoga petrophila RKU-1 |
- |
1
UgpR
Thermotogales bacterium TBF 19.5.1 |
| UgtR | - |
1
UgtR
Petrotoga mobilis SJ95 |
- | - |
1
UgtR
Thermotoga lettingae TMO |
- |
1
UgtR
Thermotoga naphthophila RKU-10 |
1
UgtR
Thermotoga neapolitana DSM 4359 |
1
UgtR
Thermotoga petrophila RKU-1 |
1
UgtR
Thermotoga sp. RQ2 |
1
UgtR
Thermotogales bacterium TBF 19.5.1 |
| UxaR | - | - | - | - | - |
4
UxaR
Thermotoga maritima MSB8 |
3
UxaR
Thermotoga naphthophila RKU-10 |
2
UxaR
Thermotoga neapolitana DSM 4359 |
3
UxaR
Thermotoga petrophila RKU-1 |
5
UxaR
Thermotoga sp. RQ2 |
- |
| XylR | - | - | - | - |
2
XylR
Thermotoga lettingae TMO |
7
XylR
Thermotoga maritima MSB8 |
7
XylR
Thermotoga naphthophila RKU-10 |
8
XylR
Thermotoga neapolitana DSM 4359 |
7
XylR
Thermotoga petrophila RKU-1 |
8
XylR
Thermotoga sp. RQ2 |
- |
| ZnuR | - | - | - | - | - |
1
ZnuR
Thermotoga maritima MSB8 |
1
ZnuR
Thermotoga naphthophila RKU-10 |
1
ZnuR
Thermotoga neapolitana DSM 4359 |
1
ZnuR
Thermotoga petrophila RKU-1 |
1
ZnuR
Thermotoga sp. RQ2 |
- |
| Zur | - |
1
Zur
Petrotoga mobilis SJ95 |
1
Zur
Thermosipho africanus TCF52B |
1
Zur
Thermosipho melanesiensis BI429 |
- |
1
Zur
Thermotoga maritima MSB8 |
1
Zur
Thermotoga naphthophila RKU-10 |
1
Zur
Thermotoga neapolitana DSM 4359 |
1
Zur
Thermotoga petrophila RKU-1 |
1
Zur
Thermotoga sp. RQ2 |
- |
| 5 | Orthologous regulator is detected and five members of regulon are predicted in a target genome |
| - | Orthologous regulator is detected in a target genome but no potential members of regulon where identified |
| 3 | Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome. |
| 3 | Neither orthologous regulator no potential members of regulon were found in a target genome |