Draft regulons reconstructed by automated conservative propagation


Template (reference) regulons			Propagated regulons
Regulog collection	Genomes	TF regulons		Taxonomic group	Genomes	TF regulons
Thermotogales	11	245	➠	Thermotogales	11	223

Studied genomes and reconstructed regulon statistics
	Genomes	Regulons	Sites
*	Fervidobacterium nodosum Rt17-B1	11	27
*	Petrotoga mobilis SJ95	10	18
*	Thermosipho africanus TCF52B	14	35
*	Thermosipho melanesiensis BI429	13	24
*	Thermotoga lettingae TMO	21	37
*	Thermotoga maritima MSB8	29	77
*	Thermotoga naphthophila RKU-10	31	76
*	Thermotoga neapolitana DSM 4359	28	64
*	Thermotoga petrophila RKU-1	29	77
*	Thermotoga sp. RQ2	27	78
*	Thermotogales bacterium TBF 19.5.1	10	18

*	- reference regulons from this genome have been used as a template for the conservative propagation

Genomic distribution of propagated regulons

Reference regulog
AraR	-	-	-	-	2 AraR Thermotoga lettingae TMO	2 AraR Thermotoga maritima MSB8	3 AraR Thermotoga naphthophila RKU-10	2 AraR Thermotoga neapolitana DSM 4359	5 AraR Thermotoga petrophila RKU-1	5 AraR Thermotoga sp. RQ2	-
ArgR	-	-	-	-	-	2 ArgR Thermotoga maritima MSB8	2 ArgR Thermotoga naphthophila RKU-10	2 ArgR Thermotoga neapolitana DSM 4359	2 ArgR Thermotoga petrophila RKU-1	2 ArgR Thermotoga sp. RQ2	-
BglR	-	-	-	-	2 BglR Thermotoga lettingae TMO	1 BglR Thermotoga maritima MSB8	1 BglR Thermotoga naphthophila RKU-10	1 BglR Thermotoga neapolitana DSM 4359	-	1 BglR Thermotoga sp. RQ2	-
CelR	1 CelR Fervidobacterium nodosum Rt17-B1	-	-	-	1 CelR Thermotoga lettingae TMO	7 CelR Thermotoga maritima MSB8	4 CelR Thermotoga naphthophila RKU-10	4 CelR Thermotoga neapolitana DSM 4359	4 CelR Thermotoga petrophila RKU-1	7 CelR Thermotoga sp. RQ2	-
ChiR	-	-	-	1 ChiR Thermosipho melanesiensis BI429	1 ChiR Thermotoga lettingae TMO	1 ChiR Thermotoga maritima MSB8	1 ChiR Thermotoga naphthophila RKU-10	1 ChiR Thermotoga neapolitana DSM 4359	1 ChiR Thermotoga petrophila RKU-1	1 ChiR Thermotoga sp. RQ2	-
Fur	1 Fur Fervidobacterium nodosum Rt17-B1	-	3 Fur Thermosipho africanus TCF52B	1 Fur Thermosipho melanesiensis BI429	1 Fur Thermotoga lettingae TMO	5 Fur Thermotoga maritima MSB8	3 Fur Thermotoga naphthophila RKU-10	2 Fur Thermotoga neapolitana DSM 4359	4 Fur Thermotoga petrophila RKU-1	4 Fur Thermotoga sp. RQ2	1 Fur Thermotogales bacterium TBF 19.5.1
GalR	2 GalR Fervidobacterium nodosum Rt17-B1	1 GalR Petrotoga mobilis SJ95	1 GalR Thermosipho africanus TCF52B	-	3 GalR Thermotoga lettingae TMO	2 GalR Thermotoga maritima MSB8	2 GalR Thermotoga naphthophila RKU-10	2 GalR Thermotoga neapolitana DSM 4359	2 GalR Thermotoga petrophila RKU-1	2 GalR Thermotoga sp. RQ2	-
GloR	-	1 GloR Petrotoga mobilis SJ95	-	-	1 GloR Thermotoga lettingae TMO	2 GloR Thermotoga maritima MSB8	2 GloR Thermotoga naphthophila RKU-10	-	-	2 GloR Thermotoga sp. RQ2	-
GluR	-	-	-	-	-	-	2 GluR Thermotoga naphthophila RKU-10	1 GluR Thermotoga neapolitana DSM 4359	1 GluR Thermotoga petrophila RKU-1	2 GluR Thermotoga sp. RQ2	-
HcpR	2 HcpR Fervidobacterium nodosum Rt17-B1	2 HcpR Petrotoga mobilis SJ95	2 HcpR Thermosipho africanus TCF52B	1 HcpR Thermosipho melanesiensis BI429	2 HcpR Thermotoga lettingae TMO	2 HcpR Thermotoga maritima MSB8	2 HcpR Thermotoga naphthophila RKU-10	1 HcpR Thermotoga neapolitana DSM 4359	2 HcpR Thermotoga petrophila RKU-1	2 HcpR Thermotoga sp. RQ2	2 HcpR Thermotogales bacterium TBF 19.5.1
HrcA	6 HrcA Fervidobacterium nodosum Rt17-B1	3 HrcA Petrotoga mobilis SJ95	4 HrcA Thermosipho africanus TCF52B	4 HrcA Thermosipho melanesiensis BI429	3 HrcA Thermotoga lettingae TMO	4 HrcA Thermotoga maritima MSB8	5 HrcA Thermotoga naphthophila RKU-10	5 HrcA Thermotoga neapolitana DSM 4359	5 HrcA Thermotoga petrophila RKU-1	4 HrcA Thermotoga sp. RQ2	3 HrcA Thermotogales bacterium TBF 19.5.1
IolR	-	-	-	-	-	1 IolR Thermotoga maritima MSB8	1 IolR Thermotoga naphthophila RKU-10	1 IolR Thermotoga neapolitana DSM 4359	1 IolR Thermotoga petrophila RKU-1	-	-
KdgR	-	-	-	-	-	6 KdgR Thermotoga maritima MSB8	6 KdgR Thermotoga naphthophila RKU-10	4 KdgR Thermotoga neapolitana DSM 4359	6 KdgR Thermotoga petrophila RKU-1	4 KdgR Thermotoga sp. RQ2	-
ManR	-	-	-	-	-	2 ManR Thermotoga maritima MSB8	1 ManR Thermotoga naphthophila RKU-10	1 ManR Thermotoga neapolitana DSM 4359	1 ManR Thermotoga petrophila RKU-1	2 ManR Thermotoga sp. RQ2	-
NiaR	-	-	1 NiaR Thermosipho africanus TCF52B	1 NiaR Thermosipho melanesiensis BI429	1 NiaR Thermotoga lettingae TMO	1 NiaR Thermotoga maritima MSB8	1 NiaR Thermotoga naphthophila RKU-10	1 NiaR Thermotoga neapolitana DSM 4359	1 NiaR Thermotoga petrophila RKU-1	1 NiaR Thermotoga sp. RQ2	-
NrdR	1 NrdR Fervidobacterium nodosum Rt17-B1	2 NrdR Petrotoga mobilis SJ95	1 NrdR Thermosipho africanus TCF52B	1 NrdR Thermosipho melanesiensis BI429	1 NrdR Thermotoga lettingae TMO	4 NrdR Thermotoga maritima MSB8	4 NrdR Thermotoga naphthophila RKU-10	4 NrdR Thermotoga neapolitana DSM 4359	4 NrdR Thermotoga petrophila RKU-1	4 NrdR Thermotoga sp. RQ2	1 NrdR Thermotogales bacterium TBF 19.5.1
PuuR	1 PuuR Fervidobacterium nodosum Rt17-B1	-	1 PuuR Thermosipho africanus TCF52B	1 PuuR Thermosipho melanesiensis BI429	1 PuuR Thermotoga lettingae TMO	1 PuuR Thermotoga maritima MSB8	1 PuuR Thermotoga naphthophila RKU-10	1 PuuR Thermotoga neapolitana DSM 4359	1 PuuR Thermotoga petrophila RKU-1	1 PuuR Thermotoga sp. RQ2	-
RbsR	-	1 RbsR Petrotoga mobilis SJ95	1 RbsR Thermosipho africanus TCF52B	-	1 RbsR Thermotoga lettingae TMO	1 RbsR Thermotoga maritima MSB8	1 RbsR Thermotoga naphthophila RKU-10	-	1 RbsR Thermotoga petrophila RKU-1	-	1 RbsR Thermotogales bacterium TBF 19.5.1
Rex	7 Rex Fervidobacterium nodosum Rt17-B1	4 Rex Petrotoga mobilis SJ95	8 Rex Thermosipho africanus TCF52B	7 Rex Thermosipho melanesiensis BI429	5 Rex Thermotoga lettingae TMO	9 Rex Thermotoga maritima MSB8	9 Rex Thermotoga naphthophila RKU-10	9 Rex Thermotoga neapolitana DSM 4359	10 Rex Thermotoga petrophila RKU-1	10 Rex Thermotoga sp. RQ2	4 Rex Thermotogales bacterium TBF 19.5.1
Rex1	2 Rex1 Fervidobacterium nodosum Rt17-B1	1 Rex1 Petrotoga mobilis SJ95	1 Rex1 Thermosipho africanus TCF52B	1 Rex1 Thermosipho melanesiensis BI429	2 Rex1 Thermotoga lettingae TMO	1 Rex1 Thermotoga maritima MSB8	1 Rex1 Thermotoga naphthophila RKU-10	1 Rex1 Thermotoga neapolitana DSM 4359	1 Rex1 Thermotoga petrophila RKU-1	1 Rex1 Thermotoga sp. RQ2	1 Rex1 Thermotogales bacterium TBF 19.5.1
RhaR	-	-	-	-	-	3 RhaR Thermotoga maritima MSB8	3 RhaR Thermotoga naphthophila RKU-10	3 RhaR Thermotoga neapolitana DSM 4359	3 RhaR Thermotoga petrophila RKU-1	-	-
TM0766	1 TM0766 Fervidobacterium nodosum Rt17-B1	-	1 TM0766 Thermosipho africanus TCF52B	1 TM0766 Thermosipho melanesiensis BI429	1 TM0766 Thermotoga lettingae TMO	1 TM0766 Thermotoga maritima MSB8	1 TM0766 Thermotoga naphthophila RKU-10	-	1 TM0766 Thermotoga petrophila RKU-1	1 TM0766 Thermotoga sp. RQ2	-
TM1030	-	-	-	-	1 TM1030 Thermotoga lettingae TMO	1 TM1030 Thermotoga maritima MSB8	1 TM1030 Thermotoga naphthophila RKU-10	1 TM1030 Thermotoga neapolitana DSM 4359	1 TM1030 Thermotoga petrophila RKU-1	1 TM1030 Thermotoga sp. RQ2	-
TreR	2 TreR Fervidobacterium nodosum Rt17-B1	-	2 TreR Thermosipho africanus TCF52B	2 TreR Thermosipho melanesiensis BI429	1 TreR Thermotoga lettingae TMO	1 TreR Thermotoga maritima MSB8	2 TreR Thermotoga naphthophila RKU-10	1 TreR Thermotoga neapolitana DSM 4359	2 TreR Thermotoga petrophila RKU-1	2 TreR Thermotoga sp. RQ2	2 TreR Thermotogales bacterium TBF 19.5.1
UctR	-	-	-	-	-	1 UctR Thermotoga maritima MSB8	1 UctR Thermotoga naphthophila RKU-10	1 UctR Thermotoga neapolitana DSM 4359	1 UctR Thermotoga petrophila RKU-1	1 UctR Thermotoga sp. RQ2	-
UgpR	-	-	1 UgpR Thermosipho africanus TCF52B	1 UgpR Thermosipho melanesiensis BI429	1 UgpR Thermotoga lettingae TMO	1 UgpR Thermotoga maritima MSB8	1 UgpR Thermotoga naphthophila RKU-10	1 UgpR Thermotoga neapolitana DSM 4359	1 UgpR Thermotoga petrophila RKU-1	-	1 UgpR Thermotogales bacterium TBF 19.5.1
UgtR	-	1 UgtR Petrotoga mobilis SJ95	-	-	1 UgtR Thermotoga lettingae TMO	-	1 UgtR Thermotoga naphthophila RKU-10	1 UgtR Thermotoga neapolitana DSM 4359	1 UgtR Thermotoga petrophila RKU-1	1 UgtR Thermotoga sp. RQ2	1 UgtR Thermotogales bacterium TBF 19.5.1
UxaR	-	-	-	-	-	4 UxaR Thermotoga maritima MSB8	3 UxaR Thermotoga naphthophila RKU-10	2 UxaR Thermotoga neapolitana DSM 4359	3 UxaR Thermotoga petrophila RKU-1	5 UxaR Thermotoga sp. RQ2	-
XylR	-	-	-	-	2 XylR Thermotoga lettingae TMO	7 XylR Thermotoga maritima MSB8	7 XylR Thermotoga naphthophila RKU-10	8 XylR Thermotoga neapolitana DSM 4359	7 XylR Thermotoga petrophila RKU-1	8 XylR Thermotoga sp. RQ2	-
ZnuR	-	-	-	-	-	1 ZnuR Thermotoga maritima MSB8	1 ZnuR Thermotoga naphthophila RKU-10	1 ZnuR Thermotoga neapolitana DSM 4359	1 ZnuR Thermotoga petrophila RKU-1	1 ZnuR Thermotoga sp. RQ2	-
Zur	-	1 Zur Petrotoga mobilis SJ95	1 Zur Thermosipho africanus TCF52B	1 Zur Thermosipho melanesiensis BI429	-	1 Zur Thermotoga maritima MSB8	1 Zur Thermotoga naphthophila RKU-10	1 Zur Thermotoga neapolitana DSM 4359	1 Zur Thermotoga petrophila RKU-1	1 Zur Thermotoga sp. RQ2	-

-- Legend --

5	Orthologous regulator is detected and five members of regulon are predicted in a target genome
-	Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3	Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3	Neither orthologous regulator no potential members of regulon were found in a target genome

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Draft regulons reconstructed by automated conservative propagation

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --