Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of UxaR regulog to Thermotoga neapolitana DSM 4359

Reference regulog properties
Source regulog: UxaR - Thermotogales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization; Pectin utilization
Effector:
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga neapolitana DSM 4359
Orthologous TF(s) CTN_0233
Regulated genes 2
Built upon 18 sites [see more]
Predicted regulatory interactions in Thermotoga neapolitana DSM 4359
Locus tag Position Score Sequence
Position: -33
Score: 6.4
Sequence: TAAAACATCACATATCT
Locus tag: CTN_0237
CTN_0237 -33 6.4 TAAAACATCACATATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaP
Ortholog function: Predicted galacturonate TRAP transporter, substrate binding subunit
Thermotoga neapolitana DSM 4359 CTN_0237 -33 6.4 TAAAACATCACATATCT
Thermotoga naphthophila RKU-10 Tnap_0217 -88 6.4 TAAAACATCACATATCT
Position: 16
Score: 6.3
Sequence: TGAAATATCACACATCT
Locus tag: CTN_0240
CTN_0240 16 6.3 TGAAATATCACACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaX
Ortholog function: Predicted sugar ABC transporter, substrate binding protein
Thermotoga neapolitana DSM 4359 CTN_0240 16 6.3 TGAAATATCACACATCT
Thermotoga naphthophila RKU-10 Tnap_0214 -35 6.3 TGAAATATCACACATCT