Regulog UxaR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization; Pectin utilization |
| Effector: | |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - GntR/Others
- By pathway - Galacturonate utilization
- By pathway - Pectin utilization
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 16 | 4 |
| Thermotoga sp. RQ2 | 18 | 5 |
| Thermotoga neapolitana DSM 4359 | 13 | 3 |
| Thermotoga petrophila RKU-1 | 18 | 3 |
| Thermotoga naphthophila RKU-10 | 16 | 3 |
| Thermotoga lettingae TMO | ||
| Thermosipho africanus TCF52B | ||
| Thermosipho melanesiensis BI429 | ||
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | ||
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| uxaP |
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Thermotoga neapolitana DSM 4359 Site: position = -33 score = 6.35322 sequence = TAAAACATCACATATCT Gene: CTN_0237: Predicted galacturonate TRAP transporter, substrate binding subunit |
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Thermotoga naphthophila RKU-10 Site: position = -88 score = 6.35322 sequence = TAAAACATCACATATCT Gene: Tnap_0217: Predicted galacturonate TRAP transporter, substrate binding subunit |
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Predicted galacturonate TRAP transporter, substrate binding subunit |
| uxaQ |
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Gene: CTN_0236: Predicted galacturonate TRAP transporter, small permease subunit |
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Gene: Tnap_0218: Predicted galacturonate TRAP transporter, small permease subunit |
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Predicted galacturonate TRAP transporter, small permease subunit |
| uxaM |
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Gene: CTN_0235: Predicted galacturonate TRAP transporter, large permease subunit |
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Gene: Tnap_0219: Predicted galacturonate TRAP transporter, large permease subunit |
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Predicted galacturonate TRAP transporter, large permease subunit |
| gnd |
Gene: TM0438: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: TRQ2_0497: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: CTN_0234: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: Tpet_0482: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: Tnap_0220: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
| uxaR |
Gene: TM0439: Regulator of pectin and galacturonate utilization, GntR family |
Gene: TRQ2_0496: Regulator of pectin and galacturonate utilization, GntR family |
Gene: CTN_0233: Regulator of pectin and galacturonate utilization, GntR family |
Gene: Tpet_0481: Regulator of pectin and galacturonate utilization, GntR family |
Gene: Tnap_0221: Regulator of pectin and galacturonate utilization, GntR family |
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Regulator of pectin and galacturonate utilization, GntR family |
| uxaE |
Gene: TM0440: D-tagaturonate epimerase |
Gene: TRQ2_0495: D-tagaturonate epimerase |
Gene: CTN_0232: D-tagaturonate epimerase |
Gene: Tpet_0480: D-tagaturonate epimerase |
Gene: Tnap_0222: D-tagaturonate epimerase |
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D-tagaturonate epimerase |
| uxuB2 |
Gene: TM0441: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent |
Gene: TRQ2_0494: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent |
Gene: CTN_0231: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent |
Gene: Tpet_0479: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent |
Gene: Tnap_0223: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent |
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D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent |
| gntE |
Gene: TM0442: novel D-mannonate-D-gluconate epimerase |
Gene: TRQ2_0493: novel D-mannonate-D-gluconate epimerase |
Gene: CTN_0230: novel D-mannonate-D-gluconate epimerase |
Gene: Tpet_0478: novel D-mannonate-D-gluconate epimerase |
Gene: Tnap_0224: novel D-mannonate-D-gluconate epimerase |
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novel D-mannonate-D-gluconate epimerase |
| gntK |
Gene: TM0443: Gluconokinase (EC 2.7.1.12) |
Gene: TRQ2_0492: Gluconokinase (EC 2.7.1.12) |
Gene: CTN_0229: Gluconokinase (EC 2.7.1.12) |
Gene: Tpet_0477: Gluconokinase (EC 2.7.1.12) |
Gene: Tnap_0225: Gluconokinase (EC 2.7.1.12) |
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Gluconokinase (EC 2.7.1.12) |
| aldH |
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Thermotoga maritima MSB8 Site: position = -25 score = 6.43026 sequence = TGAAACATCAAACATCT Gene: TM0436: alcohol dehydrogenase, zinc-containing |
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Thermotoga sp. RQ2 Site: position = -29 score = 6.43026 sequence = TGAAACATCAAACATCT Gene: TRQ2_0499: alcohol dehydrogenase, zinc-containing |
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Thermotoga petrophila RKU-1 Site: position = -28 score = 6.43026 sequence = TGAAACATCAAACATCT Gene: Tpet_0484: alcohol dehydrogenase, zinc-containing |
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alcohol dehydrogenase, zinc-containing |
| pelB |
Gene: TM0437: Polygalacturonase (EC 3.2.1.15) |
Gene: TRQ2_0498: Polygalacturonase (EC 3.2.1.15) |
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Gene: Tpet_0483: Polygalacturonase (EC 3.2.1.15) |
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Polygalacturonase (EC 3.2.1.15) |
| CRON 2. | ||||||||||||
| uxaX |
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Thermotoga neapolitana DSM 4359 Site: position = 16 score = 6.31435 sequence = TGAAATATCACACATCT Gene: CTN_0240: Predicted sugar ABC transporter, substrate binding protein |
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Thermotoga naphthophila RKU-10 Site: position = -35 score = 6.31435 sequence = TGAAATATCACACATCT Gene: Tnap_0214: Predicted sugar ABC transporter, substrate binding protein |
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Predicted sugar ABC transporter, substrate binding protein |
| uxaY |
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Gene: CTN_0239: Predicted sugar ABC transporter, permease protein |
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Gene: Tnap_0215: Predicted sugar ABC transporter, permease protein |
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Predicted sugar ABC transporter, permease protein |
| uxaZ |
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Gene: CTN_0238: Predicted sugar ABC transporter, ATP-binding protein |
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Gene: Tnap_0216: Predicted sugar ABC transporter, ATP-binding protein |
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Predicted sugar ABC transporter, ATP-binding protein |
| CRON 3. | ||||||||||||
| aguE |
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Thermotoga maritima MSB8 Site: position = -50 score = 5.36888 sequence = TGAAGTATCAGACATCA Gene: TM0432: Alpha-1,4-digalacturonate ABC transporter, substrate binding protein |
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Thermotoga sp. RQ2 Site: position = -50 score = 5.36888 sequence = TGAAGTATCAGACATCA Gene: TRQ2_0512: Alpha-1,4-digalacturonate ABC transporter, substrate binding protein |
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Alpha-1,4-digalacturonate ABC transporter, substrate binding protein |
| aguF |
Gene: TM0431: Alpha-1,4-digalacturonate ABC transporter, permease protein 1 |
Gene: TRQ2_0513: Alpha-1,4-digalacturonate ABC transporter, permease protein 1 |
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Alpha-1,4-digalacturonate ABC transporter, permease protein 1 |
| aguG |
Gene: TM0430: Alpha-1,4-digalacturonate ABC transporter, permease protein 2 |
Gene: TRQ2_0514: Alpha-1,4-digalacturonate ABC transporter, permease protein 2 |
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Alpha-1,4-digalacturonate ABC transporter, permease protein 2 |
| CRON 4. | ||||||||||||
| Tpet_0485 |
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Thermotoga petrophila RKU-1 Site: position = -39 score = 6.2468 sequence = TGAAATATCAAACATCT Gene: Tpet_0485: Predicted sugar ABC transporter, periplasmic sugar-binding protein |
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Predicted sugar ABC transporter, periplasmic sugar-binding protein |
| Tpet_0486 |
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Gene: Tpet_0486: Predicted sugar ABC transporter, permease protein 1 |
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Predicted sugar ABC transporter, permease protein 1 |
| Tpet_0487 |
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Gene: Tpet_0487: Predicted sugar ABC transporter, permease protein 2 |
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Predicted sugar ABC transporter, permease protein 2 |
| Tpet_0488 |
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Gene: Tpet_0488: Predicted sugar ABC transporter, ATP-binding protein 2 |
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Predicted sugar ABC transporter, ATP-binding protein 2 |
| Tpet_0489 |
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Gene: Tpet_0489: Predicted sugar ABC transporter, ATP-binding protein 1 |
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Predicted sugar ABC transporter, ATP-binding protein 1 |
| Tpet_0490 |
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Gene: Tpet_0490: putative beta-glucuronidase |
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putative beta-glucuronidase |
| CRON 5. | ||||||||||||
| kdgA |
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Thermotoga maritima MSB8 Site: position = -23 score = 6.04792 sequence = TTAAATATCACATATCA Gene: TM0066: 2-dehydro-3-deoxyphosphogluconate aldolase |
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Thermotoga sp. RQ2 Site: position = -29 score = 6.23139 sequence = TTAAACATCACATATCA Gene: TRQ2_0881: 2-dehydro-3-deoxyphosphogluconate aldolase |
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Thermotoga neapolitana DSM 4359 Site: position = -384 score = 6.16383 sequence = TTAAACATCAAATATCA Gene: CTN_0627: 2-dehydro-3-deoxyphosphogluconate aldolase |
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Thermotoga petrophila RKU-1 Site: position = -29 score = 6.23139 sequence = TTAAACATCACATATCA Gene: Tpet_0858: 2-dehydro-3-deoxyphosphogluconate aldolase |
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Thermotoga naphthophila RKU-10 Site: position = -29 score = 6.23139 sequence = TTAAACATCACATATCA Gene: Tnap_0696: 2-dehydro-3-deoxyphosphogluconate aldolase |
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2-dehydro-3-deoxyphosphogluconate aldolase |
| kdgK |
Gene: TM0067: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: TRQ2_0880: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: CTN_0626: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: Tpet_0857: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: Tnap_0697: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-keto-3-deoxygluconate kinase (EC 2.7.1.45) |
| uxuB |
Gene: TM0068: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: TRQ2_0879: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: CTN_0625: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: Tpet_0856: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: Tnap_0698: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxuA |
Gene: TM0069: Mannonate dehydratase (EC 4.2.1.8) |
Gene: TRQ2_0878: Mannonate dehydratase (EC 4.2.1.8) |
Gene: CTN_0624: Mannonate dehydratase (EC 4.2.1.8) |
Gene: Tpet_0855: Mannonate dehydratase (EC 4.2.1.8) |
Gene: Tnap_0699: Mannonate dehydratase (EC 4.2.1.8) |
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Mannonate dehydratase (EC 4.2.1.8) |
| CRON 6. | ||||||||||||
| pelA |
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Thermotoga maritima MSB8 Site: position = -29 score = 6.37953 sequence = TGAAACATCAGATATCT Gene: TM0433: Pectate lyase precursor (EC 4.2.2.2) |
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Thermotoga sp. RQ2 Site: position = -35 score = 6.37953 sequence = TGAAACATCAGATATCT Gene: TRQ2_0511: Pectate lyase precursor (EC 4.2.2.2) |
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Gene: Tlet_1137: Pectate lyase precursor (EC 4.2.2.2) |
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Pectate lyase precursor (EC 4.2.2.2) |
| CRON 7. | ||||||||||||
| TRQ2_0500 |
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Thermotoga sp. RQ2 Site: position = -36 score = 5.22428 sequence = CAAAATATCAGATATCA Gene: TRQ2_0500: Sugar ABC transporter, substrate-binding component |
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Sugar ABC transporter, substrate-binding component |
| pemA |
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Gene: TRQ2_0501: Putative pectinesterase (EC 3.1.1.11) |
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Putative pectinesterase (EC 3.1.1.11) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |