Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of UxaR in Thermotoga sp. RQ2

Properties
Regulator type: Transcription factor
TF locus tag: TRQ2_0496
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization; Pectin utilization
Effector:
Regulog: UxaR - Thermotogales
Statistics of regulated genes:
- Genes 18
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -35
Score: 6.4
Sequence: TGAAACATCAGATATCT
Locus tag: TRQ2_0511
Name: pelA
Funciton: Pectate lyase precursor (EC 4.2.2.2)
TRQ2_0511
pelA
Pectate lyase precursor (EC 4.2.2.2)
Position: -29
Score: 6.2
Sequence: TTAAACATCACATATCA
Locus tag: TRQ2_0881
Name: kdgA
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase
Locus tag: TRQ2_0880
Name: kdgK
Funciton: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: TRQ2_0879
Name: uxuB
Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
Locus tag: TRQ2_0878
Name: uxuA
Funciton: Mannonate dehydratase (EC 4.2.1.8)
TRQ2_0881
kdgA
2-dehydro-3-deoxyphosphogluconate aldolase
TRQ2_0880
kdgK
2-keto-3-deoxygluconate kinase (EC 2.7.1.45)
TRQ2_0879
uxuB
D-mannonate oxidoreductase (EC 1.1.1.57)
TRQ2_0878
uxuA
Mannonate dehydratase (EC 4.2.1.8)
Position: -29
Score: 6.4
Sequence: TGAAACATCAAACATCT
Locus tag: TRQ2_0499
Name: aldH
Funciton: alcohol dehydrogenase, zinc-containing
Locus tag: TRQ2_0498
Name: pelB
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: TRQ2_0497
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Locus tag: TRQ2_0496
Name: uxaR
Funciton: Regulator of pectin and galacturonate utilization, GntR family
Locus tag: TRQ2_0495
Name: uxaE
Funciton: D-tagaturonate epimerase
Locus tag: TRQ2_0494
Name: uxuB2
Funciton: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent
Locus tag: TRQ2_0493
Name: gntE
Funciton: novel D-mannonate-D-gluconate epimerase
Locus tag: TRQ2_0492
Name: gntK
Funciton: Gluconokinase (EC 2.7.1.12)
TRQ2_0499
aldH
alcohol dehydrogenase, zinc-containing
TRQ2_0498
pelB
Polygalacturonase (EC 3.2.1.15)
TRQ2_0497
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
TRQ2_0496
uxaR
Regulator of pectin and galacturonate utilization, GntR family
TRQ2_0495
uxaE
D-tagaturonate epimerase
TRQ2_0494
uxuB2
D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent
TRQ2_0493
gntE
novel D-mannonate-D-gluconate epimerase
TRQ2_0492
gntK
Gluconokinase (EC 2.7.1.12)
Position: -50
Score: 5.4
Sequence: TGAAGTATCAGACATCA
Locus tag: TRQ2_0512
Name: aguE
Funciton: Alpha-1,4-digalacturonate ABC transporter, substrate binding protein
Locus tag: TRQ2_0513
Name: aguF
Funciton: Alpha-1,4-digalacturonate ABC transporter, permease protein 1
Locus tag: TRQ2_0514
Name: aguG
Funciton: Alpha-1,4-digalacturonate ABC transporter, permease protein 2
TRQ2_0512
aguE
Alpha-1,4-digalacturonate ABC transporter, substrate binding protein
TRQ2_0513
aguF
Alpha-1,4-digalacturonate ABC transporter, permease protein 1
TRQ2_0514
aguG
Alpha-1,4-digalacturonate ABC transporter, permease protein 2
Position: -36
Score: 5.2
Sequence: CAAAATATCAGATATCA
Locus tag: TRQ2_0500
Name: TRQ2_0500
Funciton: Sugar ABC transporter, substrate-binding component
Locus tag: TRQ2_0501
Name: pemA
Funciton: Putative pectinesterase (EC 3.1.1.11)
TRQ2_0500
TRQ2_0500
Sugar ABC transporter, substrate-binding component
TRQ2_0501
pemA
Putative pectinesterase (EC 3.1.1.11)
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