Regulon of UxaR in Thermotoga maritima MSB8
| Regulator type: | Transcription factor |
| TF locus tag: | TM0439 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization; Pectin utilization |
| Effector: | |
| Regulog: | UxaR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - GntR/Others
- By pathway - Galacturonate utilization
- By pathway - Pectin utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -29
Score: 6.4 Sequence: TGAAACATCAGATATCT
Locus tag: TM0433
Name: pelA Funciton: Pectate lyase precursor (EC 4.2.2.2) |
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pelA
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Pectate lyase precursor (EC 4.2.2.2)
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Position: -50
Score: 5.4 Sequence: TGAAGTATCAGACATCA
Locus tag: TM0432
Name: aguE Funciton: Alpha-1,4-digalacturonate ABC transporter, substrate binding protein
Locus tag: TM0431
Name: aguF Funciton: Alpha-1,4-digalacturonate ABC transporter, permease protein 1
Locus tag: TM0430
Name: aguG Funciton: Alpha-1,4-digalacturonate ABC transporter, permease protein 2 |
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aguE
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Alpha-1,4-digalacturonate ABC transporter, substrate binding protein
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aguF
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Alpha-1,4-digalacturonate ABC transporter, permease protein 1
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aguG
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Alpha-1,4-digalacturonate ABC transporter, permease protein 2
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Position: -23
Score: 6 Sequence: TTAAATATCACATATCA
Locus tag: TM0066
Name: kdgA Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase
Locus tag: TM0067
Name: kdgK Funciton: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: TM0068
Name: uxuB Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
Locus tag: TM0069
Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8) |
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kdgA
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2-dehydro-3-deoxyphosphogluconate aldolase
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kdgK
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2-keto-3-deoxygluconate kinase (EC 2.7.1.45)
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uxuB
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D-mannonate oxidoreductase (EC 1.1.1.57)
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uxuA
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Mannonate dehydratase (EC 4.2.1.8)
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Position: -25
Score: 6.4 Sequence: TGAAACATCAAACATCT
Locus tag: TM0436
Name: aldH Funciton: alcohol dehydrogenase, zinc-containing
Locus tag: TM0437
Name: pelB Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: TM0438
Name: gnd Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Locus tag: TM0439
Name: uxaR Funciton: Regulator of pectin and galacturonate utilization, GntR family
Locus tag: TM0440
Name: uxaE Funciton: D-tagaturonate epimerase
Locus tag: TM0441
Name: uxuB2 Funciton: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent
Locus tag: TM0442
Name: gntE Funciton: novel D-mannonate-D-gluconate epimerase
Locus tag: TM0443
Name: gntK Funciton: Gluconokinase (EC 2.7.1.12) |
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aldH
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alcohol dehydrogenase, zinc-containing
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pelB
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Polygalacturonase (EC 3.2.1.15)
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gnd
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
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uxaR
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Regulator of pectin and galacturonate utilization, GntR family
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uxaE
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D-tagaturonate epimerase
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uxuB2
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D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent
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gntE
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novel D-mannonate-D-gluconate epimerase
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gntK
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Gluconokinase (EC 2.7.1.12)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |