Regulon of UxaR in Thermotoga naphthophila RKU-10
| Regulator type: | Transcription factor |
| TF locus tag: | Tnap_0221 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization; Pectin utilization |
| Effector: | |
| Regulog: | UxaR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - GntR/Others
- By pathway - Galacturonate utilization
- By pathway - Pectin utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -35
Score: 6.3 Sequence: TGAAATATCACACATCT
Locus tag: Tnap_0214
Name: uxaX Funciton: Predicted sugar ABC transporter, substrate binding protein
Locus tag: Tnap_0215
Name: uxaY Funciton: Predicted sugar ABC transporter, permease protein
Locus tag: Tnap_0216
Name: uxaZ Funciton: Predicted sugar ABC transporter, ATP-binding protein |
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uxaX
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Predicted sugar ABC transporter, substrate binding protein
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uxaY
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Predicted sugar ABC transporter, permease protein
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uxaZ
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Predicted sugar ABC transporter, ATP-binding protein
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Position: -29
Score: 6.2 Sequence: TTAAACATCACATATCA
Locus tag: Tnap_0696
Name: kdgA Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase
Locus tag: Tnap_0697
Name: kdgK Funciton: 2-keto-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: Tnap_0698
Name: uxuB Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
Locus tag: Tnap_0699
Name: uxuA Funciton: Mannonate dehydratase (EC 4.2.1.8) |
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kdgA
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2-dehydro-3-deoxyphosphogluconate aldolase
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kdgK
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2-keto-3-deoxygluconate kinase (EC 2.7.1.45)
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uxuB
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D-mannonate oxidoreductase (EC 1.1.1.57)
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uxuA
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Mannonate dehydratase (EC 4.2.1.8)
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Position: -88
Score: 6.4 Sequence: TAAAACATCACATATCT
Locus tag: Tnap_0217
Name: uxaP Funciton: Predicted galacturonate TRAP transporter, substrate binding subunit
Locus tag: Tnap_0218
Name: uxaQ Funciton: Predicted galacturonate TRAP transporter, small permease subunit
Locus tag: Tnap_0219
Name: uxaM Funciton: Predicted galacturonate TRAP transporter, large permease subunit
Locus tag: Tnap_0220
Name: gnd Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Locus tag: Tnap_0221
Name: uxaR Funciton: Regulator of pectin and galacturonate utilization, GntR family
Locus tag: Tnap_0222
Name: uxaE Funciton: D-tagaturonate epimerase
Locus tag: Tnap_0223
Name: uxuB2 Funciton: D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent
Locus tag: Tnap_0224
Name: gntE Funciton: novel D-mannonate-D-gluconate epimerase
Locus tag: Tnap_0225
Name: gntK Funciton: Gluconokinase (EC 2.7.1.12) |
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uxaP
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Predicted galacturonate TRAP transporter, substrate binding subunit
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uxaQ
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Predicted galacturonate TRAP transporter, small permease subunit
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uxaM
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Predicted galacturonate TRAP transporter, large permease subunit
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gnd
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
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uxaR
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Regulator of pectin and galacturonate utilization, GntR family
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uxaE
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D-tagaturonate epimerase
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uxuB2
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D-mannonate dehydrogenase (EC 1.1.1.57), NADPH-dependent
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gntE
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novel D-mannonate-D-gluconate epimerase
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gntK
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Gluconokinase (EC 2.7.1.12)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |