Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of UxaR regulog to Thermotoga sp. RQ2

Reference regulog properties
Source regulog: UxaR - Thermotogales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization; Pectin utilization
Effector:
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga sp. RQ2
Orthologous TF(s) TRQ2_0496
Regulated genes 5
Built upon 18 sites [see more]
Predicted regulatory interactions in Thermotoga sp. RQ2
Locus tag Position Score Sequence
Position: -29
Score: 6.4
Sequence: TGAAACATCAAACATCT
Locus tag: TRQ2_0499
TRQ2_0499 -29 6.4 TGAAACATCAAACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldH
Ortholog function: alcohol dehydrogenase, zinc-containing
Thermotoga maritima MSB8 TM0436 -25 6.4 TGAAACATCAAACATCT
Thermotoga sp. RQ2 TRQ2_0499 -29 6.4 TGAAACATCAAACATCT
Thermotoga petrophila RKU-1 Tpet_0484 -28 6.4 TGAAACATCAAACATCT
Position: -36
Score: 5.2
Sequence: CAAAATATCAGATATCA
Locus tag: TRQ2_0500
TRQ2_0500 -36 5.2 CAAAATATCAGATATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TRQ2_0500
Ortholog function: Sugar ABC transporter, substrate-binding component
Thermotoga sp. RQ2 TRQ2_0500 -36 5.2 CAAAATATCAGATATCA
Position: -35
Score: 6.4
Sequence: TGAAACATCAGATATCT
Locus tag: TRQ2_0511
TRQ2_0511 -35 6.4 TGAAACATCAGATATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelA
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Thermotoga maritima MSB8 TM0433 -29 6.4 TGAAACATCAGATATCT
Thermotoga sp. RQ2 TRQ2_0511 -35 6.4 TGAAACATCAGATATCT
Position: -50
Score: 5.4
Sequence: TGAAGTATCAGACATCA
Locus tag: TRQ2_0512
TRQ2_0512 -50 5.4 TGAAGTATCAGACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aguE
Ortholog function: Alpha-1,4-digalacturonate ABC transporter, substrate binding protein
Thermotoga maritima MSB8 TM0432 -50 5.4 TGAAGTATCAGACATCA
Thermotoga sp. RQ2 TRQ2_0512 -50 5.4 TGAAGTATCAGACATCA
Position: -29
Score: 6.2
Sequence: TTAAACATCACATATCA
Locus tag: TRQ2_0881
TRQ2_0881 -29 6.2 TTAAACATCACATATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgA
Ortholog function: 2-dehydro-3-deoxyphosphogluconate aldolase
Thermotoga maritima MSB8 TM0066 -23 6 TTAAATATCACATATCA
Thermotoga sp. RQ2 TRQ2_0881 -29 6.2 TTAAACATCACATATCA
Thermotoga neapolitana DSM 4359 CTN_0627 -384 6.2 TTAAACATCAAATATCA
Thermotoga petrophila RKU-1 Tpet_0858 -29 6.2 TTAAACATCACATATCA
Thermotoga naphthophila RKU-10 Tnap_0696 -29 6.2 TTAAACATCACATATCA
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