Regulog XylR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose; Glucose |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - ROK
- By effector - Xylose
- By effector - Glucose
- By pathway - Xylose utilization
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 27 | 7 |
| Thermotoga sp. RQ2 | 27 | 8 |
| Thermotoga neapolitana DSM 4359 | 26 | 8 |
| Thermotoga petrophila RKU-1 | 27 | 7 |
| Thermotoga naphthophila RKU-10 | 27 | 7 |
| Thermotoga lettingae TMO | 12 | 2 |
| Thermosipho africanus TCF52B | ||
| Thermosipho melanesiensis BI429 | ||
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | ||
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| xtpN |
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Thermotoga maritima MSB8 Site: position = -45 score = 5.38094 sequence = GAAATTTCTTTAGAGGAAAAAAT Gene: TM0309: Predicted xylose oligosaccharide ABC transporter, substrate-binding component |
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Thermotoga sp. RQ2 Site: position = -51 score = 5.38094 sequence = GAAATTTCTTTAGAGGAAAAAAT Gene: TRQ2_0622: Predicted xylose oligosaccharide ABC transporter, substrate-binding component |
*2
Thermotoga neapolitana DSM 4359 Gene: CTN_0378: Predicted xylose oligosaccharide ABC transporter, substrate-binding component Site: position = -65 score = 4.28744 sequence = AaaATTgtTTGgtAgaAAAaAAg Gene: CTN_0379: Predicted xylose oligosaccharide ABC transporter, substrate-binding component |
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Thermotoga petrophila RKU-1 Site: position = -51 score = 4.92245 sequence = GAAAGTTCTTTAGAGGAAAAAAT Gene: Tpet_0608: Predicted xylose oligosaccharide ABC transporter, substrate-binding component |
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Thermotoga naphthophila RKU-10 Site: position = -13 score = 4.93795 sequence = gaaATTTCTTtAgtgaAAAaAAT Gene: Tnap_0948: Predicted xylose oligosaccharide ABC transporter, substrate-binding component |
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Predicted xylose oligosaccharide ABC transporter, substrate-binding component |
| bgaL |
Gene: TM0310: Beta-galactosidase (EC 3.2.1.23) |
Gene: TRQ2_0621: Beta-galactosidase (EC 3.2.1.23) |
Gene: CTN_0377: Beta-galactosidase (EC 3.2.1.23) |
Gene: Tpet_0607: Beta-galactosidase (EC 3.2.1.23) |
Gene: Tnap_0949: Beta-galactosidase (EC 3.2.1.23) |
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Beta-galactosidase (EC 3.2.1.23) |
| CRON 2. | ||||||||||||
| xloE |
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Thermotoga maritima MSB8 Site: position = -53 score = 5.82684 sequence = AATATTTCCCGAAAGGAAAAAAT Gene: TM0071: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga sp. RQ2 Site: position = -53 score = 5.82684 sequence = AATATTTCCCGAAAGGAAAAAAT Gene: TRQ2_0876: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga neapolitana DSM 4359 Site: position = -52 score = 5.82684 sequence = AATATTTCCCGAAAGGAAAAAAT Gene: CTN_0622: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga petrophila RKU-1 Site: position = -54 score = 5.37705 sequence = AATATTTCCCGAAAGGAAAAAAA Gene: Tpet_0853: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga naphthophila RKU-10 Site: position = -53 score = 5.82684 sequence = AATATTTCCCGAAAGGAAAAAAT Gene: Tnap_0701: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga lettingae TMO Site: position = -52 score = 5.24436 sequence = AATTTTTCGAGGAAATAAATAAT Gene: Tlet_0350: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Xylose oligosaccharides ABC transporter, sugar-binding protein |
| xloF |
Gene: TM0072: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: TRQ2_0875: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: CTN_0621: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: Tpet_0852: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: Tnap_0702: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: Tlet_0351: Xylose oligosaccharides ABC transporter, permease protein 1 |
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Xylose oligosaccharides ABC transporter, permease protein 1 |
| xloG |
Gene: TM0073: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: TRQ2_0874: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: CTN_0620: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: Tpet_0851: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: Tnap_0703: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: Tlet_0352: Xylose oligosaccharides ABC transporter, permease protein 2 |
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Xylose oligosaccharides ABC transporter, permease protein 2 |
| xloK |
Gene: TM0074: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: TRQ2_0873: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: CTN_0619: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: Tpet_0850: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: Tnap_0704: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: Tlet_0353: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
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Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
| xloL |
Gene: TM0075: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: TRQ2_0872: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: CTN_0618: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: Tpet_0849: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: Tnap_0705: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: Tlet_0354: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
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Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
| xyl3 |
Gene: TM0076: Beta-xylosidase (EC 3.2.1.37) |
Gene: TRQ2_0871: Beta-xylosidase (EC 3.2.1.37) |
Gene: CTN_0616: Beta-xylosidase (EC 3.2.1.37) |
Gene: Tpet_0848: Beta-xylosidase (EC 3.2.1.37) |
Gene: Tnap_0706: Beta-xylosidase (EC 3.2.1.37) |
Gene: Tlet_0355: Beta-xylosidase (EC 3.2.1.37) |
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Gene: Pmob_0229: Beta-xylosidase (EC 3.2.1.37) |
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Beta-xylosidase (EC 3.2.1.37) |
| axeA |
Gene: TM0077: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: TRQ2_0870: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: CTN_0615: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: Tpet_0847: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: Tnap_0707: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: Tlet_0356: Acetyl xylan esterase (EC 3.1.1.41) |
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Acetyl xylan esterase (EC 3.1.1.41) |
| xylR |
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Gene: Tlet_0357: Xylose-responsive transcription regulator, ROK family |
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Xylose-responsive transcription regulator, ROK family |
| CTN_0617 |
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Gene: CTN_0617: Endo-1,3-beta-xylanase |
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Endo-1,3-beta-xylanase |
| CRON 3. | ||||||||||||
| xynB |
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Thermotoga maritima MSB8 Site: position = -189 score = 5.82684 sequence = ATTTTTTCCTTTCGGGAAATATT Gene: TM0070: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Thermotoga sp. RQ2 Site: position = -189 score = 5.82684 sequence = ATTTTTTCCTTTCGGGAAATATT Gene: TRQ2_0877: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Thermotoga neapolitana DSM 4359 Site: position = -190 score = 5.82684 sequence = ATTTTTTCCTTTCGGGAAATATT Gene: CTN_0623: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Thermotoga petrophila RKU-1 Site: position = -189 score = 5.37705 sequence = TTTTTTTCCTTTCGGGAAATATT Gene: Tpet_0854: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Thermotoga naphthophila RKU-10 Site: position = -189 score = 5.82684 sequence = ATTTTTTCCTTTCGGGAAATATT Gene: Tnap_0700: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
| CRON 4. | ||||||||||||
| xynA3 |
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Thermotoga sp. RQ2 Site: position = -40 score = 5.24781 sequence = GTTTTTTCCTTTCTGAAAATAAC Gene: TRQ2_1549: Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) |
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Thermotoga neapolitana DSM 4359 Site: position = -41 score = 5.24781 sequence = GTTTTTTCCTTTCTGAAAATAAC Gene: CTN_1302: Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) |
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Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) |
| CRON 5. | ||||||||||||
| xylA |
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Thermotoga maritima MSB8 Site: position = -38 score = 4.98147 sequence = ATAATTGATTGATAGAAAAAATT Gene: TM1667: Xylose isomerase (EC 5.3.1.5) |
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Thermotoga sp. RQ2 Site: position = -38 score = 4.98147 sequence = ATAATTGATTGATAGAAAAAATT Gene: TRQ2_1162: Xylose isomerase (EC 5.3.1.5) |
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Thermotoga neapolitana DSM 4359 Site: position = -38 score = 4.98147 sequence = ATAATTGATTGATAGAAAAAATT Gene: CTN_0720: Xylose isomerase (EC 5.3.1.5) |
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Thermotoga petrophila RKU-1 Site: position = -38 score = 4.98147 sequence = ATAATTGATTGATAGAAAAAATT Gene: Tpet_1124: Xylose isomerase (EC 5.3.1.5) |
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Thermotoga naphthophila RKU-10 Site: position = -38 score = 4.98147 sequence = ATAATTGATTGATAGAAAAAATT Gene: Tnap_1139: Xylose isomerase (EC 5.3.1.5) |
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Gene: Pmob_0226: Xylose isomerase (EC 5.3.1.5) |
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Xylose isomerase (EC 5.3.1.5) |
| TM1668 |
Gene: TM1668: conserved hypothetical protein |
Gene: TRQ2_1161: conserved hypothetical protein |
Gene: CTN_0719: conserved hypothetical protein |
Gene: Tpet_1123: conserved hypothetical protein |
Gene: Tnap_1138: conserved hypothetical protein |
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Gene: Pmob_0461: conserved hypothetical protein |
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conserved hypothetical protein |
| CRON 6. | ||||||||||||
| xylR |
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Thermotoga maritima MSB8 Site: position = -61 score = 5.43417 sequence = ATTATTTCCTGCATATAATTAAT Gene: TM0110: Xylose-responsive transcription regulator, ROK family |
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Thermotoga sp. RQ2 Site: position = -61 score = 5.22702 sequence = ATTATTTCCCGCATATAATTAAT Gene: TRQ2_0837: Xylose-responsive transcription regulator, ROK family |
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Thermotoga neapolitana DSM 4359 Site: position = -34 score = 5.149 sequence = ATTAATTCCTGCATATAATTAAT Gene: CTN_0581: Xylose-responsive transcription regulator, ROK family |
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Thermotoga petrophila RKU-1 Site: position = -61 score = 5.22702 sequence = ATTATTTCCCGCATATAATTAAT Gene: Tpet_0814: Xylose-responsive transcription regulator, ROK family |
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Thermotoga naphthophila RKU-10 Site: position = -61 score = 5.22702 sequence = ATTATTTCCCGCATATAATTAAT Gene: Tnap_0740: Xylose-responsive transcription regulator, ROK family |
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Xylose-responsive transcription regulator, ROK family |
| adhB |
Gene: TM0111: Iron-containing alcohol dehydrogenase |
Gene: TRQ2_0836: Iron-containing alcohol dehydrogenase |
Gene: CTN_0580: Iron-containing alcohol dehydrogenase |
Gene: Tpet_0813: Iron-containing alcohol dehydrogenase |
Gene: Tnap_0741: Iron-containing alcohol dehydrogenase |
Gene: Tlet_0180: Iron-containing alcohol dehydrogenase |
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Iron-containing alcohol dehydrogenase |
| xylF |
Gene: TM0112: Xylose ABC transporter, permease component |
Gene: TRQ2_0835: Xylose ABC transporter, permease component |
Gene: CTN_0578: Xylose ABC transporter, permease component |
Gene: Tpet_0812: Xylose ABC transporter, permease component |
Gene: Tnap_0742: Xylose ABC transporter, permease component |
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Thermotoga lettingae TMO Site: position = -183 score = 5.22669 sequence = AATTTTTCGGGGAAAGAAATAAT Gene: Tlet_0358: Xylose ABC transporter, permease component |
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Xylose ABC transporter, permease component |
| xylU |
Gene: TM0113: Acetyl xylan esterase XylU (EC 3.1.1.41) |
Gene: TRQ2_0834: Acetyl xylan esterase XylU (EC 3.1.1.41) |
Gene: CTN_0577: Acetyl xylan esterase XylU (EC 3.1.1.41) |
Gene: Tpet_0811: Acetyl xylan esterase XylU (EC 3.1.1.41) |
Gene: Tnap_0743: Acetyl xylan esterase XylU (EC 3.1.1.41) |
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Acetyl xylan esterase XylU (EC 3.1.1.41) |
| xylE |
Gene: TM0114: Xylose ABC transporter, substrate-binding component |
Gene: TRQ2_0833: Xylose ABC transporter, substrate-binding component |
Gene: CTN_0576: Xylose ABC transporter, substrate-binding component |
Gene: Tpet_0810: Xylose ABC transporter, substrate-binding component |
Gene: Tnap_0744: Xylose ABC transporter, substrate-binding component |
Gene: Tlet_0359: Xylose ABC transporter, substrate-binding component |
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Xylose ABC transporter, substrate-binding component |
| xylK |
Gene: TM0115: Xylose ABC transporter, ATP-binding component |
Gene: TRQ2_0832: Xylose ABC transporter, ATP-binding component |
Gene: CTN_0575: Xylose ABC transporter, ATP-binding component |
Gene: Tpet_0809: Xylose ABC transporter, ATP-binding component |
Gene: Tnap_0745: Xylose ABC transporter, ATP-binding component |
Gene: Tlet_0360: Xylose ABC transporter, ATP-binding component |
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Xylose ABC transporter, ATP-binding component |
| xylB |
Gene: TM0116: Xylulose kinase (EC 2.7.1.17) |
Gene: TRQ2_0831: Xylulose kinase (EC 2.7.1.17) |
Gene: CTN_0574: Xylulose kinase (EC 2.7.1.17) |
Gene: Tpet_0808: Xylulose kinase (EC 2.7.1.17) |
Gene: Tnap_0746: Xylulose kinase (EC 2.7.1.17) |
Gene: Tlet_0361: Xylulose kinase (EC 2.7.1.17) |
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Xylulose kinase (EC 2.7.1.17) |
| CRON 7. | ||||||||||||
| CTN_0633 |
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Thermotoga neapolitana DSM 4359 Site: position = -245 score = 5.28183 sequence = GTTATTTCTTACGGAGAAAAAAT Gene: CTN_0633: Transposase, IS605 OrfB family |
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Transposase, IS605 OrfB family |
| xtpF |
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Thermotoga maritima MSB8 Site: position = -254 score = 5.76129 sequence = GTTATTTTTTGTAAAGAAAAAAT Gene: TM0060: Xylan oligosaccharide ABC transporter, permease component 1 |
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Thermotoga sp. RQ2 Site: position = -254 score = 5.76129 sequence = GTTATTTTTTGTAAAGAAAAAAT Gene: TRQ2_0886: Xylan oligosaccharide ABC transporter, permease component 1 |
Gene: CTN_0634: Xylan oligosaccharide ABC transporter, permease component 1 |
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Thermotoga petrophila RKU-1 Site: position = -255 score = 5.76129 sequence = GTTATTTTTTGTAAAGAAAAAAT Gene: Tpet_0864: Xylan oligosaccharide ABC transporter, permease component 1 |
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Thermotoga naphthophila RKU-10 Site: position = -253 score = 5.76129 sequence = GTTATTTTTTGTAAAGAAAAAAT Gene: Tnap_0690: Xylan oligosaccharide ABC transporter, permease component 1 |
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Xylan oligosaccharide ABC transporter, permease component 1 |
| xtpG |
Gene: TM0059: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: TRQ2_0887: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: CTN_0635: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: Tpet_0865: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: Tnap_0689: Xylan oligosaccharide ABC transporter, permease component 2 |
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Xylan oligosaccharide ABC transporter, permease component 2 |
| xtpK |
Gene: TM0058: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: TRQ2_0888: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: CTN_0636: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: Tpet_0866: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: Tnap_0688: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
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Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
| xtpL |
Gene: TM0057: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: TRQ2_0889: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: CTN_0637: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: Tpet_0867: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: Tnap_0687: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
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Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
| xtpE |
Gene: TM0056: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: TRQ2_0890: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: CTN_0638: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: Tpet_0868: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: Tnap_0686: Xylan oligosaccharide ABC transporter, substrate-binding component |
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Xylan oligosaccharide ABC transporter, substrate-binding component |
| aguA |
Gene: TM0055: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: TRQ2_0891: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: CTN_0639: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: Tpet_0869: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: Tnap_0685: Alpha-glucuronidase (EC 3.2.1.139) |
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Alpha-glucuronidase (EC 3.2.1.139) |
| CRON 8. | ||||||||||||
| xynA1 |
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Thermotoga maritima MSB8 Site: position = -87 score = 5.76129 sequence = ATTTTTTCTTTACAAAAAATAAC Gene: TM0061: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga sp. RQ2 Site: position = -87 score = 5.76129 sequence = ATTTTTTCTTTACAAAAAATAAC Gene: TRQ2_0885: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga neapolitana DSM 4359 Site: position = -41 score = 5.28183 sequence = ATTTTTTCTCCGTAAGAAATAAC Gene: CTN_0632: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga petrophila RKU-1 Site: position = -87 score = 5.76129 sequence = ATTTTTTCTTTACAAAAAATAAC Gene: Tpet_0863: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga naphthophila RKU-10 Site: position = -87 score = 5.76129 sequence = ATTTTTTCTTTACAAAAAATAAC Gene: Tnap_0691: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Gene: Pmob_0231: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
| cenC |
Gene: TM0062: Carbohydrate-binding, CenC domain protein |
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Gene: Tpet_0862: Carbohydrate-binding, CenC domain protein |
Gene: Tnap_0692: Carbohydrate-binding, CenC domain protein |
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Carbohydrate-binding, CenC domain protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |