Regulon of XylR in Thermotoga petrophila RKU-1
| Regulator type: | Transcription factor |
| TF locus tag: | Tpet_0814 |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose; Glucose |
| Regulog: | XylR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - ROK
- By effector - Xylose
- By effector - Glucose
- By pathway - Xylose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -51
Score: 4.9 Sequence: GAAAGTTCTTTAGAGGAAAAAAT
Locus tag: Tpet_0608
Name: xtpN Funciton: Predicted xylose oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tpet_0607
Name: bgaL Funciton: Beta-galactosidase (EC 3.2.1.23) |
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xtpN
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Predicted xylose oligosaccharide ABC transporter, substrate-binding component
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bgaL
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Beta-galactosidase (EC 3.2.1.23)
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Position: -61
Score: 5.2 Sequence: ATTATTTCCCGCATATAATTAAT
Locus tag: Tpet_0814
Name: xylR Funciton: Xylose-responsive transcription regulator, ROK family
Locus tag: Tpet_0813
Name: adhB Funciton: Iron-containing alcohol dehydrogenase
Locus tag: Tpet_0812
Name: xylF Funciton: Xylose ABC transporter, permease component
Locus tag: Tpet_0811
Name: xylU Funciton: Acetyl xylan esterase XylU (EC 3.1.1.41)
Locus tag: Tpet_0810
Name: xylE Funciton: Xylose ABC transporter, substrate-binding component
Locus tag: Tpet_0809
Name: xylK Funciton: Xylose ABC transporter, ATP-binding component
Locus tag: Tpet_0808
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
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xylR
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Xylose-responsive transcription regulator, ROK family
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adhB
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Iron-containing alcohol dehydrogenase
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xylF
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Xylose ABC transporter, permease component
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xylU
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Acetyl xylan esterase XylU (EC 3.1.1.41)
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xylE
|
Xylose ABC transporter, substrate-binding component
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xylK
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Xylose ABC transporter, ATP-binding component
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xylB
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Xylulose kinase (EC 2.7.1.17)
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Position: -38
Score: 5 Sequence: ATAATTGATTGATAGAAAAAATT
Locus tag: Tpet_1124
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: Tpet_1123
Name: TM1668 Funciton: conserved hypothetical protein |
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xylA
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Xylose isomerase (EC 5.3.1.5)
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TM1668
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conserved hypothetical protein
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Position: -54
Score: 5.4 Sequence: AATATTTCCCGAAAGGAAAAAAA
Locus tag: Tpet_0853
Name: xloE Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein
Locus tag: Tpet_0852
Name: xloF Funciton: Xylose oligosaccharides ABC transporter, permease protein 1
Locus tag: Tpet_0851
Name: xloG Funciton: Xylose oligosaccharides ABC transporter, permease protein 2
Locus tag: Tpet_0850
Name: xloK Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
Locus tag: Tpet_0849
Name: xloL Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
Locus tag: Tpet_0848
Name: xyl3 Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: Tpet_0847
Name: axeA Funciton: Acetyl xylan esterase (EC 3.1.1.41) |
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xloE
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Xylose oligosaccharides ABC transporter, sugar-binding protein
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xloF
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Xylose oligosaccharides ABC transporter, permease protein 1
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xloG
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Xylose oligosaccharides ABC transporter, permease protein 2
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xloK
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Xylose oligosaccharides ABC transporter, ATP-binding protein 1
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xloL
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Xylose oligosaccharides ABC transporter, ATP-binding protein 2
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xyl3
|
Beta-xylosidase (EC 3.2.1.37)
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axeA
|
Acetyl xylan esterase (EC 3.1.1.41)
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Position: -189
Score: 5.4 Sequence: TTTTTTTCCTTTCGGGAAATATT
Locus tag: Tpet_0854
Name: xynB Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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xynB
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Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
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Position: -87
Score: 5.8 Sequence: ATTTTTTCTTTACAAAAAATAAC
Locus tag: Tpet_0863
Name: xynA1 Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Locus tag: Tpet_0862
Name: cenC Funciton: Carbohydrate-binding, CenC domain protein |
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xynA1
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Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
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cenC
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Carbohydrate-binding, CenC domain protein
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Position: -255
Score: 5.8 Sequence: GTTATTTTTTGTAAAGAAAAAAT
Locus tag: Tpet_0864
Name: xtpF Funciton: Xylan oligosaccharide ABC transporter, permease component 1
Locus tag: Tpet_0865
Name: xtpG Funciton: Xylan oligosaccharide ABC transporter, permease component 2
Locus tag: Tpet_0866
Name: xtpK Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
Locus tag: Tpet_0867
Name: xtpL Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
Locus tag: Tpet_0868
Name: xtpE Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tpet_0869
Name: aguA Funciton: Alpha-glucuronidase (EC 3.2.1.139) |
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xtpF
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Xylan oligosaccharide ABC transporter, permease component 1
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xtpG
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Xylan oligosaccharide ABC transporter, permease component 2
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xtpK
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Xylan oligosaccharide ABC transporter, ATP-binding protein 1
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xtpL
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Xylan oligosaccharide ABC transporter, ATP-binding protein 2
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xtpE
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Xylan oligosaccharide ABC transporter, substrate-binding component
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aguA
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Alpha-glucuronidase (EC 3.2.1.139)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |