Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of XylR in Thermotoga naphthophila RKU-10

Properties
Regulator type: Transcription factor
TF locus tag: Tnap_0740
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose; Glucose
Regulog: XylR - Thermotogales
Statistics of regulated genes:
- Genes 27
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -13
Score: 4.9
Sequence: gaaATTTCTTtAgtgaAAAaAAT
Locus tag: Tnap_0948
Name: xtpN
Funciton: Predicted xylose oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tnap_0949
Name: bgaL
Funciton: Beta-galactosidase (EC 3.2.1.23)
xtpN
Predicted xylose oligosaccharide ABC transporter, substrate-binding component
bgaL
Beta-galactosidase (EC 3.2.1.23)

Position: -38
Score: 5
Sequence: ATAATTGATTGATAGAAAAAATT
Locus tag: Tnap_1139
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: Tnap_1138
Name: TM1668
Funciton: conserved hypothetical protein
xylA
Xylose isomerase (EC 5.3.1.5)
TM1668
conserved hypothetical protein

Position: -61
Score: 5.2
Sequence: ATTATTTCCCGCATATAATTAAT
Locus tag: Tnap_0740
Name: xylR
Funciton: Xylose-responsive transcription regulator, ROK family
Locus tag: Tnap_0741
Name: adhB
Funciton: Iron-containing alcohol dehydrogenase
Locus tag: Tnap_0742
Name: xylF
Funciton: Xylose ABC transporter, permease component
Locus tag: Tnap_0743
Name: xylU
Funciton: Acetyl xylan esterase XylU (EC 3.1.1.41)
Locus tag: Tnap_0744
Name: xylE
Funciton: Xylose ABC transporter, substrate-binding component
Locus tag: Tnap_0745
Name: xylK
Funciton: Xylose ABC transporter, ATP-binding component
Locus tag: Tnap_0746
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
xylR
Xylose-responsive transcription regulator, ROK family
adhB
Iron-containing alcohol dehydrogenase
xylF
Xylose ABC transporter, permease component
xylU
Acetyl xylan esterase XylU (EC 3.1.1.41)
xylE
Xylose ABC transporter, substrate-binding component
xylK
Xylose ABC transporter, ATP-binding component
xylB
Xylulose kinase (EC 2.7.1.17)

Position: -53
Score: 5.8
Sequence: AATATTTCCCGAAAGGAAAAAAT
Locus tag: Tnap_0701
Name: xloE
Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein
Locus tag: Tnap_0702
Name: xloF
Funciton: Xylose oligosaccharides ABC transporter, permease protein 1
Locus tag: Tnap_0703
Name: xloG
Funciton: Xylose oligosaccharides ABC transporter, permease protein 2
Locus tag: Tnap_0704
Name: xloK
Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
Locus tag: Tnap_0705
Name: xloL
Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
Locus tag: Tnap_0706
Name: xyl3
Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: Tnap_0707
Name: axeA
Funciton: Acetyl xylan esterase (EC 3.1.1.41)
xloE
Xylose oligosaccharides ABC transporter, sugar-binding protein
xloF
Xylose oligosaccharides ABC transporter, permease protein 1
xloG
Xylose oligosaccharides ABC transporter, permease protein 2
xloK
Xylose oligosaccharides ABC transporter, ATP-binding protein 1
xloL
Xylose oligosaccharides ABC transporter, ATP-binding protein 2
xyl3
Beta-xylosidase (EC 3.2.1.37)
axeA
Acetyl xylan esterase (EC 3.1.1.41)

Position: -189
Score: 5.8
Sequence: ATTTTTTCCTTTCGGGAAATATT
Locus tag: Tnap_0700
Name: xynB
Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
xynB
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )

Position: -253
Score: 5.8
Sequence: GTTATTTTTTGTAAAGAAAAAAT
Locus tag: Tnap_0690
Name: xtpF
Funciton: Xylan oligosaccharide ABC transporter, permease component 1
Locus tag: Tnap_0689
Name: xtpG
Funciton: Xylan oligosaccharide ABC transporter, permease component 2
Locus tag: Tnap_0688
Name: xtpK
Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
Locus tag: Tnap_0687
Name: xtpL
Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
Locus tag: Tnap_0686
Name: xtpE
Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tnap_0685
Name: aguA
Funciton: Alpha-glucuronidase (EC 3.2.1.139)
xtpF
Xylan oligosaccharide ABC transporter, permease component 1
xtpG
Xylan oligosaccharide ABC transporter, permease component 2
xtpK
Xylan oligosaccharide ABC transporter, ATP-binding protein 1
xtpL
Xylan oligosaccharide ABC transporter, ATP-binding protein 2
xtpE
Xylan oligosaccharide ABC transporter, substrate-binding component
aguA
Alpha-glucuronidase (EC 3.2.1.139)

Position: -87
Score: 5.8
Sequence: ATTTTTTCTTTACAAAAAATAAC
Locus tag: Tnap_0691
Name: xynA1
Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Locus tag: Tnap_0692
Name: cenC
Funciton: Carbohydrate-binding, CenC domain protein
xynA1
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
cenC
Carbohydrate-binding, CenC domain protein
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