Regulon of XylR in Thermotoga naphthophila RKU-10

Properties
Regulator type:	Transcription factor
TF locus tag:	Tnap_0740
Regulator family:	ROK
Regulation mode:	repressor
Biological process:	Xylose utilization
Effector:	Xylose; Glucose
Regulog:	XylR - Thermotogales
Statistics of regulated genes:
- Genes	27
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Thermotogales
By TF family - ROK
By effector - Xylose
By effector - Glucose
By pathway - Xylose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -13 Score: 4.9 Sequence: gaaATTTCTTtAgtgaAAAaAAT Locus tag: Tnap_0948 Name: xtpN Funciton: Predicted xylose oligosaccharide ABC transporter, substrate-binding component Locus tag: Tnap_0949 Name: bgaL Funciton: Beta-galactosidase (EC 3.2.1.23)
	Tnap_0948	xtpN	Predicted xylose oligosaccharide ABC transporter, substrate-binding component
	Tnap_0949	bgaL	Beta-galactosidase (EC 3.2.1.23)
Position: -38 Score: 5 Sequence: ATAATTGATTGATAGAAAAAATT Locus tag: Tnap_1139 Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5) Locus tag: Tnap_1138 Name: TM1668 Funciton: conserved hypothetical protein
	Tnap_1139	xylA	Xylose isomerase (EC 5.3.1.5)
	Tnap_1138	TM1668	conserved hypothetical protein
Position: -61 Score: 5.2 Sequence: ATTATTTCCCGCATATAATTAAT Locus tag: Tnap_0740 Name: xylR Funciton: Xylose-responsive transcription regulator, ROK family Locus tag: Tnap_0741 Name: adhB Funciton: Iron-containing alcohol dehydrogenase Locus tag: Tnap_0742 Name: xylF Funciton: Xylose ABC transporter, permease component Locus tag: Tnap_0743 Name: xylU Funciton: Acetyl xylan esterase XylU (EC 3.1.1.41) Locus tag: Tnap_0744 Name: xylE Funciton: Xylose ABC transporter, substrate-binding component Locus tag: Tnap_0745 Name: xylK Funciton: Xylose ABC transporter, ATP-binding component Locus tag: Tnap_0746 Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
	Tnap_0740	xylR	Xylose-responsive transcription regulator, ROK family
	Tnap_0741	adhB	Iron-containing alcohol dehydrogenase
	Tnap_0742	xylF	Xylose ABC transporter, permease component
	Tnap_0743	xylU	Acetyl xylan esterase XylU (EC 3.1.1.41)
	Tnap_0744	xylE	Xylose ABC transporter, substrate-binding component
	Tnap_0745	xylK	Xylose ABC transporter, ATP-binding component
	Tnap_0746	xylB	Xylulose kinase (EC 2.7.1.17)
Position: -53 Score: 5.8 Sequence: AATATTTCCCGAAAGGAAAAAAT Locus tag: Tnap_0701 Name: xloE Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein Locus tag: Tnap_0702 Name: xloF Funciton: Xylose oligosaccharides ABC transporter, permease protein 1 Locus tag: Tnap_0703 Name: xloG Funciton: Xylose oligosaccharides ABC transporter, permease protein 2 Locus tag: Tnap_0704 Name: xloK Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 Locus tag: Tnap_0705 Name: xloL Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 Locus tag: Tnap_0706 Name: xyl3 Funciton: Beta-xylosidase (EC 3.2.1.37) Locus tag: Tnap_0707 Name: axeA Funciton: Acetyl xylan esterase (EC 3.1.1.41)
	Tnap_0701	xloE	Xylose oligosaccharides ABC transporter, sugar-binding protein
	Tnap_0702	xloF	Xylose oligosaccharides ABC transporter, permease protein 1
	Tnap_0703	xloG	Xylose oligosaccharides ABC transporter, permease protein 2
	Tnap_0704	xloK	Xylose oligosaccharides ABC transporter, ATP-binding protein 1
	Tnap_0705	xloL	Xylose oligosaccharides ABC transporter, ATP-binding protein 2
	Tnap_0706	xyl3	Beta-xylosidase (EC 3.2.1.37)
	Tnap_0707	axeA	Acetyl xylan esterase (EC 3.1.1.41)
Position: -189 Score: 5.8 Sequence: ATTTTTTCCTTTCGGGAAATATT Locus tag: Tnap_0700 Name: xynB Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
	Tnap_0700	xynB	Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
Position: -253 Score: 5.8 Sequence: GTTATTTTTTGTAAAGAAAAAAT Locus tag: Tnap_0690 Name: xtpF Funciton: Xylan oligosaccharide ABC transporter, permease component 1 Locus tag: Tnap_0689 Name: xtpG Funciton: Xylan oligosaccharide ABC transporter, permease component 2 Locus tag: Tnap_0688 Name: xtpK Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 Locus tag: Tnap_0687 Name: xtpL Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 Locus tag: Tnap_0686 Name: xtpE Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component Locus tag: Tnap_0685 Name: aguA Funciton: Alpha-glucuronidase (EC 3.2.1.139)
	Tnap_0690	xtpF	Xylan oligosaccharide ABC transporter, permease component 1
	Tnap_0689	xtpG	Xylan oligosaccharide ABC transporter, permease component 2
	Tnap_0688	xtpK	Xylan oligosaccharide ABC transporter, ATP-binding protein 1
	Tnap_0687	xtpL	Xylan oligosaccharide ABC transporter, ATP-binding protein 2
	Tnap_0686	xtpE	Xylan oligosaccharide ABC transporter, substrate-binding component
	Tnap_0685	aguA	Alpha-glucuronidase (EC 3.2.1.139)
Position: -87 Score: 5.8 Sequence: ATTTTTTCTTTACAAAAAATAAC Locus tag: Tnap_0691 Name: xynA1 Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) Locus tag: Tnap_0692 Name: cenC Funciton: Carbohydrate-binding, CenC domain protein
	Tnap_0691	xynA1	Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
	Tnap_0692	cenC	Carbohydrate-binding, CenC domain protein

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of XylR in Thermotoga naphthophila RKU-10

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --