Regulog HrcA - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - HrcA
- By TF family - HrcA
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 9 | 4 |
| Thermotoga sp. RQ2 | 8 | 4 |
| Thermotoga neapolitana DSM 4359 | 11 | 5 |
| Thermotoga petrophila RKU-1 | 10 | 5 |
| Thermotoga naphthophila RKU-10 | 10 | 5 |
| Thermotoga lettingae TMO | 8 | 3 |
| Thermosipho africanus TCF52B | 8 | 4 |
| Thermosipho melanesiensis BI429 | 8 | 4 |
| Fervidobacterium nodosum Rt17-B1 | 10 | 6 |
| Petrotoga mobilis SJ95 | 8 | 4 |
| Thermotogales bacterium TBF 19.5.1 | 8 | 3 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| groS |
*
Thermotoga maritima MSB8 Site: position = -48 score = 6.61133 sequence = TTAGCAGTCGAATGATGAGAGTGCTAA Gene: TM0505: GroES chaperonin |
*
Thermotoga sp. RQ2 Site: position = -48 score = 6.43529 sequence = TTAGCAGTCGAACGATGAGAGTGCTAA Gene: TRQ2_0431: GroES chaperonin |
*2
Thermotoga neapolitana DSM 4359 Site: position = -52 score = 6.24123 sequence = TTAGCAGTCATGAGTCGAGAGTGCTAA Gene: CTN_0166: GroES chaperonin Gene: CTN_0165: GroES chaperonin |
*
Thermotoga petrophila RKU-1 Site: position = -48 score = 6.43529 sequence = TTAGCAGTCGAACGATGAGAGTGCTAA Gene: Tpet_0416: GroES chaperonin |
*
Thermotoga naphthophila RKU-10 Site: position = -48 score = 6.08443 sequence = TTAGCAGTCAGACGATGAGAGTGCTAA Gene: Tnap_0286: GroES chaperonin |
*
Thermotoga lettingae TMO Site: position = -57 score = 6.50601 sequence = TTAGCACTCAAACAGTTCGAGTGATAA Gene: Tlet_0318: GroES chaperonin |
*
Thermosipho africanus TCF52B Site: position = -53 score = 5.86469 sequence = TTAGCAGTCAATGAATTAGAGTGACAA Gene: THA_270: GroES chaperonin |
*
Thermosipho melanesiensis BI429 Site: position = -54 score = 5.82558 sequence = TTAGCAGTCGATGATTAAGAGTGACAA Gene: Tmel_0053: GroES chaperonin |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -61 score = 5.80433 sequence = TTAACAAACGGAATATTAGAGTGATAA Gene: Fnod_1544: GroES chaperonin |
*
Petrotoga mobilis SJ95 Site: position = -85 score = 6.85445 sequence = TTAGCACTCTTAATATTTGATTGCTAA Gene: Pmob_1157: GroES chaperonin |
*
Thermotogales bacterium TBF 19.5.1 Site: position = -71 score = 6.2951 sequence = TTAGCAGACTCATATAAAGAGTGCTAA Gene: Kole_1626: GroES chaperonin |
GroES chaperonin |
| groL |
Gene: TM0506: GroEL chaperonin |
Gene: TRQ2_0430: GroEL chaperonin |
Gene: CTN_0164: GroEL chaperonin |
Gene: Tpet_0415: GroEL chaperonin |
Gene: Tnap_0287: GroEL chaperonin |
Gene: Tlet_0317: GroEL chaperonin |
Gene: THA_269: GroEL chaperonin |
Gene: Tmel_0052: GroEL chaperonin |
Gene: Fnod_1543: GroEL chaperonin |
Gene: Pmob_1158: GroEL chaperonin |
Gene: Kole_1627: GroEL chaperonin |
GroEL chaperonin |
| CRON 2. | ||||||||||||
| hrcA |
*
Thermotoga maritima MSB8 Site: position = -30 score = 6.54111 sequence = TTAGCACTCAAAAGAAGGGAGTGCTAA Gene: TM0851: Heat shock response regulator, HrcA family |
*
Thermotoga sp. RQ2 Site: position = -30 score = 6.54111 sequence = TTAGCACTCAAAAGAAGGGAGTGCTAA Gene: TRQ2_0076: Heat shock response regulator, HrcA family |
*
Thermotoga neapolitana DSM 4359 Site: position = -28 score = 6.64654 sequence = TTAGCACTCAAAAGAAAGGAGTGCTAA Gene: CTN_1724: Heat shock response regulator, HrcA family |
*
Thermotoga petrophila RKU-1 Site: position = -30 score = 6.54111 sequence = TTAGCACTCAAAAGAAGGGAGTGCTAA Gene: Tpet_0076: Heat shock response regulator, HrcA family |
*
Thermotoga naphthophila RKU-10 Site: position = -30 score = 6.54111 sequence = TTAGCACTCAAAAGAAGGGAGTGCTAA Gene: Tnap_0076: Heat shock response regulator, HrcA family |
*
Thermotoga lettingae TMO Site: position = -29 score = 6.751 sequence = TTAGCACTCAAATGATGAGAGTGATAA Gene: Tlet_1782: Heat shock response regulator, HrcA family |
*
Thermosipho africanus TCF52B Site: position = -28 score = 5.83476 sequence = TTATCAGACAAGGATAAAGAGTGATAA Gene: THA_306: Heat shock response regulator, HrcA family |
*
Thermosipho melanesiensis BI429 Site: position = -51 score = 6.12726 sequence = TTATCAGACATAGCATAAGAGTGATAA Gene: Tmel_0089: Heat shock response regulator, HrcA family |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -103 score = 5.1343 sequence = TTGGCAGATGGATAATAAGTTTGCTAA Gene: Fnod_1242: Heat shock response regulator, HrcA family |
*
Petrotoga mobilis SJ95 Site: position = -28 score = 5.79694 sequence = TTAGCACTTAATATGCGGGAGTGATAA Gene: Pmob_1823: Heat shock response regulator, HrcA family |
*
Thermotogales bacterium TBF 19.5.1 Site: position = -28 score = 5.60512 sequence = TTAGCAGTCTCCAGGGAGGAGTGCTAA Gene: Kole_1384: Heat shock response regulator, HrcA family |
Heat shock response regulator, HrcA family |
| grpE |
Gene: TM0850: Heat shock protein |
Gene: TRQ2_0077: Heat shock protein |
Gene: CTN_1725: Heat shock protein |
Gene: Tpet_0077: Heat shock protein |
Gene: Tnap_0077: Heat shock protein |
Gene: Tlet_1781: Heat shock protein |
Gene: THA_305: Heat shock protein |
Gene: Tmel_0088: Heat shock protein |
Gene: Fnod_1243: Heat shock protein |
Gene: Pmob_1824: Heat shock protein |
Gene: Kole_1385: Heat shock protein |
Heat shock protein |
| dnaJ |
Gene: TM0849: Chaperone Hsp40 |
Gene: TRQ2_0078: Chaperone Hsp40 |
Gene: CTN_1726: Chaperone Hsp40 |
Gene: Tpet_0078: Chaperone Hsp40 |
Gene: Tnap_0078: Chaperone Hsp40 |
Gene: Tlet_1780: Chaperone Hsp40 |
Gene: THA_304: Chaperone Hsp40 |
Gene: Tmel_0087: Chaperone Hsp40 |
Gene: Fnod_1244: Chaperone Hsp40 |
Gene: Pmob_1825: Chaperone Hsp40 |
Gene: Kole_1386: Chaperone Hsp40 |
Chaperone Hsp40 |
| CRON 3. | ||||||||||||
| recF |
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*
Fervidobacterium nodosum Rt17-B1 Site: position = -93 score = 5.75024 sequence = TTATCACTCCATCTTGTCAAGTGATAA Gene: Fnod_1362: DNA replication and repair protein RecF |
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DNA replication and repair protein RecF |
| rgyR |
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Gene: Fnod_1363: Reverse gyrase |
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Reverse gyrase |
| CRON 4. | ||||||||||||
| TM0370 |
*
Thermotoga maritima MSB8 Site: position = -16 score = 5.90504 sequence = TTATCAAAAGAAAAAAATGATTGCTAA Gene: TM0370: Predicted RecA-like ATPase, COG0467 |
Gene: TRQ2_0561: Predicted RecA-like ATPase, COG0467 |
*
Thermotoga neapolitana DSM 4359 Site: position = -20 score = 6.35876 sequence = TTATCAATCGATATTGATGAGTGCTAA Gene: CTN_0301: Predicted RecA-like ATPase, COG0467 |
*
Thermotoga petrophila RKU-1 Site: position = -49 score = 6.3797 sequence = TTATCAAACGAAAAAAATGATTGCTAA Gene: Tpet_0547: Predicted RecA-like ATPase, COG0467 |
*
Thermotoga naphthophila RKU-10 Site: position = -49 score = 6.3797 sequence = TTATCAAACGAAAAAAATGATTGCTAA Gene: Tnap_0165: Predicted RecA-like ATPase, COG0467 |
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Gene: THA_115: Predicted RecA-like ATPase, COG0467 |
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Predicted RecA-like ATPase, COG0467 |
| TM0369 |
Gene: TM0369: Conserved hypothetical protein |
Gene: TRQ2_0562: Conserved hypothetical protein |
Gene: CTN_0300: Conserved hypothetical protein |
Gene: Tpet_0548: Conserved hypothetical protein |
Gene: Tnap_0164: Conserved hypothetical protein |
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Gene: THA_116: Conserved hypothetical protein |
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Conserved hypothetical protein |
| CRON 5. | ||||||||||||
| clpA |
|
*
Thermotoga sp. RQ2 Site: position = -51 score = 6.34661 sequence = TTATCAAACGTAAGATTTAAGTGCTAA Gene: TRQ2_0054: Chaperone protein |
*
Thermotoga neapolitana DSM 4359 Site: position = -42 score = 6.25257 sequence = TTATCATTCTTAATAATTAAGTGCTAA Gene: CTN_1702: Chaperone protein |
*
Thermotoga petrophila RKU-1 Site: position = -51 score = 6.59266 sequence = TTATCAAACGTAATATTTGAGTGCTAA Gene: Tpet_0054: Chaperone protein |
*
Thermotoga naphthophila RKU-10 Site: position = -51 score = 6.59266 sequence = TTATCAAACGTAATATTTGAGTGCTAA Gene: Tnap_0054: Chaperone protein |
|
*
Thermosipho africanus TCF52B Site: position = -54 score = 6.55914 sequence = TTATCAGTCTAAATATATGACTGATAA Gene: THA_711: Chaperone protein |
*
Thermosipho melanesiensis BI429 Site: position = -55 score = 6.31991 sequence = TTATCAGTCTATATATGTGACTGATAA Gene: Tmel_0413: Chaperone protein |
|
*
Petrotoga mobilis SJ95 Site: position = -68 score = 6.26411 sequence = TTAGCAAATAAAAGTAACGAGTGATAA Gene: Pmob_1629: Chaperone protein |
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Chaperone protein |
| CRON 6. | ||||||||||||
| dnaK |
*
Thermotoga maritima MSB8 Site: position = -179 score = 5.69509 sequence = TTATCATTCAAACATTTCATTTGCTAT Gene: TM0373: Chaperone Hsp70 |
*
Thermotoga sp. RQ2 Site: position = -179 score = 5.94261 sequence = TTATCATTCAAAAGTTTCATTTGCTAT Gene: TRQ2_0558: Chaperone Hsp70 |
*
Thermotoga neapolitana DSM 4359 Site: position = -174 score = 6.16296 sequence = TTATCATTCATAAGTTTCGTTTGCTAT Gene: CTN_0304: Chaperone Hsp70 |
*
Thermotoga petrophila RKU-1 Site: position = -179 score = 5.94261 sequence = TTATCATTCAAAAGTTTCATTTGCTAT Gene: Tpet_0544: Chaperone Hsp70 |
*
Thermotoga naphthophila RKU-10 Site: position = -179 score = 5.94261 sequence = TTATCATTCAAAAGTTTCATTTGCTAT Gene: Tnap_0168: Chaperone Hsp70 |
*
Thermotoga lettingae TMO Site: position = -169 score = 5.87844 sequence = GTATCAGTCTATAATTACGAGTGCTAT Gene: Tlet_0014: Chaperone Hsp70 |
*
Thermosipho africanus TCF52B Site: position = -59 score = 6.33068 sequence = TTATCACTCTTGACAAAAGACTGCTAA Site: position = -159 score = 5.16258 sequence = ATAACAAACTTATGTAACAATTGCTAT Gene: THA_1433: Chaperone Hsp70 |
*
Thermosipho melanesiensis BI429 Site: position = -157 score = 5.58445 sequence = ATAACAAACGAATGTTACGATTGCTAT Site: position = -57 score = 6.47169 sequence = TTATCACTCTTGACAATAGAGTGATAA Gene: Tmel_1128: Chaperone Hsp70 |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -82 score = 6.41321 sequence = TTATCACTCTTGACAAATGATTGCTAA Gene: Fnod_1209: Chaperone Hsp70 |
*
Petrotoga mobilis SJ95 Site: position = -205 score = 5.71644 sequence = TTTTCACTCTTAGATTAAGAGTGATAT Gene: Pmob_1649: Chaperone Hsp70 |
*
Thermotogales bacterium TBF 19.5.1 Site: position = -82 score = 5.61923 sequence = ATGGCAAACTTGACATTCGATTGCTAA Gene: Kole_0886: Chaperone Hsp70 |
Chaperone Hsp70 |
| hsp20 |
Gene: TM0374: Chaperone Hsp20 |
Gene: TRQ2_0557: Chaperone Hsp20 |
Gene: CTN_0305: Chaperone Hsp20 |
Gene: Tpet_0543: Chaperone Hsp20 |
Gene: Tnap_0169: Chaperone Hsp20 |
Gene: Tlet_0015: Chaperone Hsp20 |
Gene: THA_1432: Chaperone Hsp20 |
Gene: Tmel_1127: Chaperone Hsp20 |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -244 score = 5.70555 sequence = TTATCATTATTAAGTTACAACTGATAA Site: position = -141 score = 6.49219 sequence = TTATCACTCTTGACAATTGAGTGATAA Gene: Fnod_0102: Chaperone Hsp20 |
Gene: Pmob_1650: Chaperone Hsp20 |
Gene: Kole_0885: Chaperone Hsp20 |
Chaperone Hsp20 |
| clpB |
Gene: TM1391: Chaperone protein |
Gene: TRQ2_1438: Chaperone protein |
Gene: CTN_1200: Chaperone protein |
Gene: Tpet_1392: Chaperone protein |
Gene: Tnap_1412: Chaperone protein |
Gene: Tlet_0016: Chaperone protein |
Gene: THA_686: Chaperone protein |
Gene: Tmel_0597: Chaperone protein |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -85 score = 6.04768 sequence = ATATCACTCTTGACATATAAGTGATAA Gene: Fnod_0310: Chaperone protein |
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Gene: Kole_0884: Chaperone protein |
Chaperone protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |