Regulog TreR - Thermotogales

Properties
Regulator type:	Transcription factor
Regulator family:	ROK
Regulation mode:	repressor
Biological process:	Trehalose utilization
Effector:	Trehalose
Phylum:	Thermotogae
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Thermotogales
By TF family - ROK
By effector - Trehalose
By pathway - Trehalose utilization

Statistics of regulated genes
Genome	Genes	Operons
Thermotoga maritima MSB8	2	1
Thermotoga sp. RQ2	5	2
Thermotoga neapolitana DSM 4359	6	2
Thermotoga petrophila RKU-1	6	2
Thermotoga naphthophila RKU-10	6	2
Thermotoga lettingae TMO	5	1
Thermosipho africanus TCF52B	5	2
Thermosipho melanesiensis BI429	5	2
Fervidobacterium nodosum Rt17-B1	5	2
Petrotoga mobilis SJ95
Thermotogales bacterium TBF 19.5.1	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
amyE	Thermotoga maritima MSB8	Thermotoga sp. RQ2	* Thermotoga neapolitana DSM 4359 Site: position = -478 score = 5.89165 sequence = tTaTtTTCATTTAACGAAaAAAa Gene: CTN_0781: extracellular alpha-amylase precursor	* Thermotoga petrophila RKU-1 Site: position = -143 score = 5.89165 sequence = TTATTTTCATTTAACGAAAAAAA Gene: Tpet_0953: extracellular alpha-amylase precursor	* Thermotoga naphthophila RKU-10 Site: position = -143 score = 5.89165 sequence = TTATTTTCATTTAACGAAAAAAA Gene: Tnap_0601: extracellular alpha-amylase precursor	Thermotoga lettingae TMO	Thermosipho africanus TCF52B	Thermosipho melanesiensis BI429	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_1683: extracellular alpha-amylase precursor	Petrotoga mobilis SJ95 Gene: Pmob_1428: extracellular alpha-amylase precursor	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0461: extracellular alpha-amylase precursor	extracellular alpha-amylase precursor
treE	Thermotoga maritima MSB8	* Thermotoga sp. RQ2 Site: position = -139 score = 5.89165 sequence = TTATTTTCATTTAACGAAAAAAA Gene: TRQ2_0970: Trehalose ABC transporter, substrate-binding component	Thermotoga neapolitana DSM 4359 Gene: CTN_0780: Trehalose ABC transporter, substrate-binding component	Thermotoga petrophila RKU-1 Gene: Tpet_0954: Trehalose ABC transporter, substrate-binding component	Thermotoga naphthophila RKU-10 Gene: Tnap_0600: Trehalose ABC transporter, substrate-binding component	Thermotoga lettingae TMO	* Thermosipho africanus TCF52B Site: position = -327 score = 5.93507 sequence = TTTAATTCGAATTTCGAAAAAAT Site: position = -56 score = 5.89233 sequence = ATAAATTCGAAAATCGAAAAAAT Gene: THA_844: Trehalose ABC transporter, substrate-binding component	* Thermosipho melanesiensis BI429 Site: position = -316 score = 5.59713 sequence = ATTTTTTTGAATTTCGAAATAAT Gene: Tmel_1820: Trehalose ABC transporter, substrate-binding component	* Fervidobacterium nodosum Rt17-B1 Site: position = -248 score = 5.9263 sequence = ATATATTCGAATTTCGAATATAT Gene: Fnod_0450: Trehalose ABC transporter, substrate-binding component	Petrotoga mobilis SJ95 Gene: Pmob_0027: Trehalose ABC transporter, substrate-binding component	Thermotogales bacterium TBF 19.5.1	Trehalose ABC transporter, substrate-binding component
treF	Thermotoga maritima MSB8	Thermotoga sp. RQ2 Gene: TRQ2_0971: Trehalose ABC transporter, permease component 1	Thermotoga neapolitana DSM 4359 Gene: CTN_0779: Trehalose ABC transporter, permease component 1	Thermotoga petrophila RKU-1 Gene: Tpet_0955: Trehalose ABC transporter, permease component 1	Thermotoga naphthophila RKU-10 Gene: Tnap_0599: Trehalose ABC transporter, permease component 1	Thermotoga lettingae TMO	Thermosipho africanus TCF52B Gene: THA_845: Trehalose ABC transporter, permease component 1	Thermosipho melanesiensis BI429 Gene: Tmel_1819: Trehalose ABC transporter, permease component 1	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0449: Trehalose ABC transporter, permease component 1	Petrotoga mobilis SJ95 Gene: Pmob_0028: Trehalose ABC transporter, permease component 1	Thermotogales bacterium TBF 19.5.1	Trehalose ABC transporter, permease component 1
treG	Thermotoga maritima MSB8	Thermotoga sp. RQ2 Gene: TRQ2_0972: Trehalose ABC transporter, permease component 2	Thermotoga neapolitana DSM 4359 Gene: CTN_0778: Trehalose ABC transporter, permease component 2	Thermotoga petrophila RKU-1 Gene: Tpet_0956: Trehalose ABC transporter, permease component 2	Thermotoga naphthophila RKU-10 Gene: Tnap_0598: Trehalose ABC transporter, permease component 2	Thermotoga lettingae TMO	Thermosipho africanus TCF52B Gene: THA_846: Trehalose ABC transporter, permease component 2	Thermosipho melanesiensis BI429 Gene: Tmel_1818: Trehalose ABC transporter, permease component 2	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0448: Trehalose ABC transporter, permease component 2	Petrotoga mobilis SJ95 Gene: Pmob_0029: Trehalose ABC transporter, permease component 2	Thermotogales bacterium TBF 19.5.1	Trehalose ABC transporter, permease component 2

CRON 2.
treX	Thermotoga maritima MSB8	Thermotoga sp. RQ2	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga naphthophila RKU-10	* Thermotoga lettingae TMO Site: position = -8 score = 5.70249 sequence = ATTAATTCATGTTACGACAAAAT Gene: Tlet_1844: Predicted trehalose ABC transporter, substrate-binding component (Archaea-type)	Thermosipho africanus TCF52B	Thermosipho melanesiensis BI429	Fervidobacterium nodosum Rt17-B1	Petrotoga mobilis SJ95	* Thermotogales bacterium TBF 19.5.1 Site: position = -74 score = 5.62443 sequence = CTTTATTCAAGACTTGAATTTAT Gene: Kole_0303: Predicted trehalose ABC transporter, substrate-binding component (Archaea-type)	Predicted trehalose ABC transporter, substrate-binding component (Archaea-type)
treY	Thermotoga maritima MSB8	Thermotoga sp. RQ2	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga naphthophila RKU-10	Thermotoga lettingae TMO Gene: Tlet_1843: Predicted trehalose ABC transporter, permease component 1 (Archaea-type)	Thermosipho africanus TCF52B	Thermosipho melanesiensis BI429	Fervidobacterium nodosum Rt17-B1	Petrotoga mobilis SJ95	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0302: Predicted trehalose ABC transporter, permease component 1 (Archaea-type)	Predicted trehalose ABC transporter, permease component 1 (Archaea-type)
treZ	Thermotoga maritima MSB8	Thermotoga sp. RQ2	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga naphthophila RKU-10	Thermotoga lettingae TMO Gene: Tlet_1842: Predicted trehalose ABC transporter, permease component 2 (Archaea-type)	Thermosipho africanus TCF52B	Thermosipho melanesiensis BI429	Fervidobacterium nodosum Rt17-B1	Petrotoga mobilis SJ95	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0301: Predicted trehalose ABC transporter, permease component 2 (Archaea-type)	Predicted trehalose ABC transporter, permease component 2 (Archaea-type)
treT	* Thermotoga maritima MSB8 Site: position = -38 score = 6.09365 sequence = ATTAATTCAAGTTACGAATAAAT Gene: TM0392: Trehalose synthase, nucleoside diphosphate glucose dependent	* Thermotoga sp. RQ2 Site: position = -38 score = 6.09365 sequence = ATTAATTCAAGTTACGAATAAAT Gene: TRQ2_0542: Trehalose synthase, nucleoside diphosphate glucose dependent	* Thermotoga neapolitana DSM 4359 Site: position = -37 score = 6.09365 sequence = ATTAATTCAAGTTACGAATAAAT Gene: CTN_0277: Trehalose synthase, nucleoside diphosphate glucose dependent	* Thermotoga petrophila RKU-1 Site: position = -38 score = 6.09365 sequence = ATTAATTCAAGTTACGAATAAAT Gene: Tpet_0528: Trehalose synthase, nucleoside diphosphate glucose dependent	* Thermotoga naphthophila RKU-10 Site: position = -38 score = 6.09365 sequence = ATTAATTCAAGTTACGAATAAAT Gene: Tnap_0184: Trehalose synthase, nucleoside diphosphate glucose dependent	Thermotoga lettingae TMO Gene: Tlet_1841: Trehalose synthase, nucleoside diphosphate glucose dependent	* Thermosipho africanus TCF52B Site: position = -35 score = 5.93507 sequence = ATTTTTTCGAAATTCGAATTAAA Gene: THA_843: Trehalose synthase, nucleoside diphosphate glucose dependent	* Thermosipho melanesiensis BI429 Site: position = -38 score = 5.59713 sequence = ATTATTTCGAAATTCAAAAAAAT Gene: Tmel_1821: Trehalose synthase, nucleoside diphosphate glucose dependent	* Fervidobacterium nodosum Rt17-B1 Site: position = -127 score = 5.9263 sequence = ATATATTCGAAATTCGAATATAT Gene: Fnod_0451: Trehalose synthase, nucleoside diphosphate glucose dependent	Petrotoga mobilis SJ95	* Thermotogales bacterium TBF 19.5.1 Site: position = -75 score = 5.64614 sequence = ATTTATTCAATACATGAACAAAG Gene: Kole_0299: Trehalose synthase, nucleoside diphosphate glucose dependent	Trehalose synthase, nucleoside diphosphate glucose dependent
treR	Thermotoga maritima MSB8 Gene: TM0393: Regulator of trehalose utilization TreR, ROK family	Thermotoga sp. RQ2 Gene: TRQ2_0541: Regulator of trehalose utilization TreR, ROK family	Thermotoga neapolitana DSM 4359 Gene: CTN_0276: Regulator of trehalose utilization TreR, ROK family	Thermotoga petrophila RKU-1 Gene: Tpet_0527: Regulator of trehalose utilization TreR, ROK family	Thermotoga naphthophila RKU-10 Gene: Tnap_0185: Regulator of trehalose utilization TreR, ROK family	Thermotoga lettingae TMO Gene: Tlet_1840: Regulator of trehalose utilization TreR, ROK family	Thermosipho africanus TCF52B Gene: THA_842: Regulator of trehalose utilization TreR, ROK family	Thermosipho melanesiensis BI429 Gene: Tmel_1822: Regulator of trehalose utilization TreR, ROK family	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0452: Regulator of trehalose utilization TreR, ROK family	Petrotoga mobilis SJ95	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0300: Regulator of trehalose utilization TreR, ROK family	Regulator of trehalose utilization TreR, ROK family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TreR - Thermotogales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --