Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of XylR regulog to Thermotoga neapolitana DSM 4359

Reference regulog properties
Source regulog: XylR - Thermotogales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose; Glucose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga neapolitana DSM 4359
Orthologous TF(s) CTN_0581
Regulated genes 8
Built upon 39 sites [see more]
Predicted regulatory interactions in Thermotoga neapolitana DSM 4359
Locus tag Position Score Sequence
Position: -66
Score: 4.3
Sequence: AAAATTGTTTGGTAGAAAAAAAG
Locus tag: CTN_0379
CTN_0379 -66 4.3 AAAATTGTTTGGTAGAAAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: xtpN
Ortholog function: Predicted xylose oligosaccharide ABC transporter, substrate-binding component
Thermotoga maritima MSB8 TM0309 -45 5.4 GAAATTTCTTTAGAGGAAAAAAT
Thermotoga sp. RQ2 TRQ2_0622 -51 5.4 GAAATTTCTTTAGAGGAAAAAAT
Thermotoga neapolitana DSM 4359 CTN_0379 -65 4.3 AaaATTgtTTGgtAgaAAAaAAg
Thermotoga neapolitana DSM 4359 CTN_0378 -65 4.3 AaaATTgtTTGgtAgaAAAaAAg
Thermotoga petrophila RKU-1 Tpet_0608 -51 4.9 GAAAGTTCTTTAGAGGAAAAAAT
Thermotoga naphthophila RKU-10 Tnap_0948 -13 4.9 gaaATTTCTTtAgtgaAAAaAAT
Position: -34
Score: 5.1
Sequence: ATTAATTCCTGCATATAATTAAT
Locus tag: CTN_0581
CTN_0581 -34 5.1 ATTAATTCCTGCATATAATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose-responsive transcription regulator, ROK family
Thermotoga maritima MSB8 TM0110 -61 5.4 ATTATTTCCTGCATATAATTAAT
Thermotoga sp. RQ2 TRQ2_0837 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga neapolitana DSM 4359 CTN_0581 -34 5.1 ATTAATTCCTGCATATAATTAAT
Thermotoga petrophila RKU-1 Tpet_0814 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga naphthophila RKU-10 Tnap_0740 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga lettingae TMO Tlet_0357 -52 5.2 AATTTTTCGAGGAAATAAATAAT
Position: -52
Score: 5.8
Sequence: AATATTTCCCGAAAGGAAAAAAT
Locus tag: CTN_0622
CTN_0622 -52 5.8 AATATTTCCCGAAAGGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xloE
Ortholog function: Xylose oligosaccharides ABC transporter, sugar-binding protein
Thermotoga maritima MSB8 TM0071 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga sp. RQ2 TRQ2_0876 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga neapolitana DSM 4359 CTN_0622 -52 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga petrophila RKU-1 Tpet_0853 -54 5.4 AATATTTCCCGAAAGGAAAAAAA
Thermotoga naphthophila RKU-10 Tnap_0701 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga lettingae TMO Tlet_0350 -52 5.2 AATTTTTCGAGGAAATAAATAAT
Position: -190
Score: 5.8
Sequence: ATTTTTTCCTTTCGGGAAATATT
Locus tag: CTN_0623
CTN_0623 -190 5.8 ATTTTTTCCTTTCGGGAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynB
Ortholog function: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
Thermotoga maritima MSB8 TM0070 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Thermotoga sp. RQ2 TRQ2_0877 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Thermotoga neapolitana DSM 4359 CTN_0623 -190 5.8 ATTTTTTCCTTTCGGGAAATATT
Thermotoga petrophila RKU-1 Tpet_0854 -189 5.4 TTTTTTTCCTTTCGGGAAATATT
Thermotoga naphthophila RKU-10 Tnap_0700 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Position: -41
Score: 5.3
Sequence: ATTTTTTCTCCGTAAGAAATAAC
Locus tag: CTN_0632
CTN_0632 -41 5.3 ATTTTTTCTCCGTAAGAAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynA1
Ortholog function: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Thermotoga maritima MSB8 TM0061 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Thermotoga sp. RQ2 TRQ2_0885 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Thermotoga neapolitana DSM 4359 CTN_0632 -41 5.3 ATTTTTTCTCCGTAAGAAATAAC
Thermotoga petrophila RKU-1 Tpet_0863 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Thermotoga naphthophila RKU-10 Tnap_0691 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Position: -245
Score: 5.3
Sequence: GTTATTTCTTACGGAGAAAAAAT
Locus tag: CTN_0633
CTN_0633 -245 5.3 GTTATTTCTTACGGAGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CTN_0633
Ortholog function: Transposase, IS605 OrfB family
Thermotoga neapolitana DSM 4359 CTN_0633 -245 5.3 GTTATTTCTTACGGAGAAAAAAT
Position: -38
Score: 5
Sequence: ATAATTGATTGATAGAAAAAATT
Locus tag: CTN_0720
CTN_0720 -38 5 ATAATTGATTGATAGAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Thermotoga maritima MSB8 TM1667 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga sp. RQ2 TRQ2_1162 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga neapolitana DSM 4359 CTN_0720 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga petrophila RKU-1 Tpet_1124 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga naphthophila RKU-10 Tnap_1139 -38 5 ATAATTGATTGATAGAAAAAATT
Position: -41
Score: 5.2
Sequence: GTTTTTTCCTTTCTGAAAATAAC
Locus tag: CTN_1302
CTN_1302 -41 5.2 GTTTTTTCCTTTCTGAAAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynA3
Ortholog function: Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8)
Thermotoga sp. RQ2 TRQ2_1549 -40 5.2 GTTTTTTCCTTTCTGAAAATAAC
Thermotoga neapolitana DSM 4359 CTN_1302 -41 5.2 GTTTTTTCCTTTCTGAAAATAAC
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