Propagation of XylR regulog to Thermotoga neapolitana DSM 4359
| Source regulog: | XylR - Thermotogales |
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose; Glucose |
| Phylum: | Thermotogae |
| Propagated regulon: | |
| Target genome | Thermotoga neapolitana DSM 4359 |
| Orthologous TF(s) | CTN_0581 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -66
Score: 4.3 Sequence: AAAATTGTTTGGTAGAAAAAAAG
Locus tag: CTN_0379
|
||||
| CTN_0379 | -66 | 4.3 | AAAATTGTTTGGTAGAAAAAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xtpN | ||||
| Ortholog function: Predicted xylose oligosaccharide ABC transporter, substrate-binding component | ||||
| Thermotoga maritima MSB8 | TM0309 | -45 | 5.4 | GAAATTTCTTTAGAGGAAAAAAT |
| Thermotoga sp. RQ2 | TRQ2_0622 | -51 | 5.4 | GAAATTTCTTTAGAGGAAAAAAT |
| Thermotoga neapolitana DSM 4359 | CTN_0379 | -65 | 4.3 | AaaATTgtTTGgtAgaAAAaAAg |
| Thermotoga neapolitana DSM 4359 | CTN_0378 | -65 | 4.3 | AaaATTgtTTGgtAgaAAAaAAg |
| Thermotoga petrophila RKU-1 | Tpet_0608 | -51 | 4.9 | GAAAGTTCTTTAGAGGAAAAAAT |
| Thermotoga naphthophila RKU-10 | Tnap_0948 | -13 | 4.9 | gaaATTTCTTtAgtgaAAAaAAT |
|
Position: -34
Score: 5.1 Sequence: ATTAATTCCTGCATATAATTAAT
Locus tag: CTN_0581
|
||||
| CTN_0581 | -34 | 5.1 | ATTAATTCCTGCATATAATTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylR | ||||
| Ortholog function: Xylose-responsive transcription regulator, ROK family | ||||
| Thermotoga maritima MSB8 | TM0110 | -61 | 5.4 | ATTATTTCCTGCATATAATTAAT |
| Thermotoga sp. RQ2 | TRQ2_0837 | -61 | 5.2 | ATTATTTCCCGCATATAATTAAT |
| Thermotoga neapolitana DSM 4359 | CTN_0581 | -34 | 5.1 | ATTAATTCCTGCATATAATTAAT |
| Thermotoga petrophila RKU-1 | Tpet_0814 | -61 | 5.2 | ATTATTTCCCGCATATAATTAAT |
| Thermotoga naphthophila RKU-10 | Tnap_0740 | -61 | 5.2 | ATTATTTCCCGCATATAATTAAT |
| Thermotoga lettingae TMO | Tlet_0357 | -52 | 5.2 | AATTTTTCGAGGAAATAAATAAT |
|
Position: -52
Score: 5.8 Sequence: AATATTTCCCGAAAGGAAAAAAT
Locus tag: CTN_0622
|
||||
| CTN_0622 | -52 | 5.8 | AATATTTCCCGAAAGGAAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xloE | ||||
| Ortholog function: Xylose oligosaccharides ABC transporter, sugar-binding protein | ||||
| Thermotoga maritima MSB8 | TM0071 | -53 | 5.8 | AATATTTCCCGAAAGGAAAAAAT |
| Thermotoga sp. RQ2 | TRQ2_0876 | -53 | 5.8 | AATATTTCCCGAAAGGAAAAAAT |
| Thermotoga neapolitana DSM 4359 | CTN_0622 | -52 | 5.8 | AATATTTCCCGAAAGGAAAAAAT |
| Thermotoga petrophila RKU-1 | Tpet_0853 | -54 | 5.4 | AATATTTCCCGAAAGGAAAAAAA |
| Thermotoga naphthophila RKU-10 | Tnap_0701 | -53 | 5.8 | AATATTTCCCGAAAGGAAAAAAT |
| Thermotoga lettingae TMO | Tlet_0350 | -52 | 5.2 | AATTTTTCGAGGAAATAAATAAT |
|
Position: -190
Score: 5.8 Sequence: ATTTTTTCCTTTCGGGAAATATT
Locus tag: CTN_0623
|
||||
| CTN_0623 | -190 | 5.8 | ATTTTTTCCTTTCGGGAAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xynB | ||||
| Ortholog function: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) | ||||
| Thermotoga maritima MSB8 | TM0070 | -189 | 5.8 | ATTTTTTCCTTTCGGGAAATATT |
| Thermotoga sp. RQ2 | TRQ2_0877 | -189 | 5.8 | ATTTTTTCCTTTCGGGAAATATT |
| Thermotoga neapolitana DSM 4359 | CTN_0623 | -190 | 5.8 | ATTTTTTCCTTTCGGGAAATATT |
| Thermotoga petrophila RKU-1 | Tpet_0854 | -189 | 5.4 | TTTTTTTCCTTTCGGGAAATATT |
| Thermotoga naphthophila RKU-10 | Tnap_0700 | -189 | 5.8 | ATTTTTTCCTTTCGGGAAATATT |
|
Position: -41
Score: 5.3 Sequence: ATTTTTTCTCCGTAAGAAATAAC
Locus tag: CTN_0632
|
||||
| CTN_0632 | -41 | 5.3 | ATTTTTTCTCCGTAAGAAATAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xynA1 | ||||
| Ortholog function: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) | ||||
| Thermotoga maritima MSB8 | TM0061 | -87 | 5.8 | ATTTTTTCTTTACAAAAAATAAC |
| Thermotoga sp. RQ2 | TRQ2_0885 | -87 | 5.8 | ATTTTTTCTTTACAAAAAATAAC |
| Thermotoga neapolitana DSM 4359 | CTN_0632 | -41 | 5.3 | ATTTTTTCTCCGTAAGAAATAAC |
| Thermotoga petrophila RKU-1 | Tpet_0863 | -87 | 5.8 | ATTTTTTCTTTACAAAAAATAAC |
| Thermotoga naphthophila RKU-10 | Tnap_0691 | -87 | 5.8 | ATTTTTTCTTTACAAAAAATAAC |
|
Position: -245
Score: 5.3 Sequence: GTTATTTCTTACGGAGAAAAAAT
Locus tag: CTN_0633
|
||||
| CTN_0633 | -245 | 5.3 | GTTATTTCTTACGGAGAAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CTN_0633 | ||||
| Ortholog function: Transposase, IS605 OrfB family | ||||
| Thermotoga neapolitana DSM 4359 | CTN_0633 | -245 | 5.3 | GTTATTTCTTACGGAGAAAAAAT |
|
Position: -38
Score: 5 Sequence: ATAATTGATTGATAGAAAAAATT
Locus tag: CTN_0720
|
||||
| CTN_0720 | -38 | 5 | ATAATTGATTGATAGAAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylA | ||||
| Ortholog function: Xylose isomerase (EC 5.3.1.5) | ||||
| Thermotoga maritima MSB8 | TM1667 | -38 | 5 | ATAATTGATTGATAGAAAAAATT |
| Thermotoga sp. RQ2 | TRQ2_1162 | -38 | 5 | ATAATTGATTGATAGAAAAAATT |
| Thermotoga neapolitana DSM 4359 | CTN_0720 | -38 | 5 | ATAATTGATTGATAGAAAAAATT |
| Thermotoga petrophila RKU-1 | Tpet_1124 | -38 | 5 | ATAATTGATTGATAGAAAAAATT |
| Thermotoga naphthophila RKU-10 | Tnap_1139 | -38 | 5 | ATAATTGATTGATAGAAAAAATT |
|
Position: -41
Score: 5.2 Sequence: GTTTTTTCCTTTCTGAAAATAAC
Locus tag: CTN_1302
|
||||
| CTN_1302 | -41 | 5.2 | GTTTTTTCCTTTCTGAAAATAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xynA3 | ||||
| Ortholog function: Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) | ||||
| Thermotoga sp. RQ2 | TRQ2_1549 | -40 | 5.2 | GTTTTTTCCTTTCTGAAAATAAC |
| Thermotoga neapolitana DSM 4359 | CTN_1302 | -41 | 5.2 | GTTTTTTCCTTTCTGAAAATAAC |