Regulog GalR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Galactosides utilization |
| Effector: | Galactose |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - LacI
- By effector - Galactose
- By pathway - Galactosides utilization
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 15 | 2 |
| Thermotoga sp. RQ2 | 15 | 2 |
| Thermotoga neapolitana DSM 4359 | 19 | 1 |
| Thermotoga petrophila RKU-1 | 11 | 2 |
| Thermotoga naphthophila RKU-10 | 6 | 2 |
| Thermotoga lettingae TMO | 13 | 3 |
| Thermosipho africanus TCF52B | 8 | 1 |
| Thermosipho melanesiensis BI429 | ||
| Fervidobacterium nodosum Rt17-B1 | 8 | 2 |
| Petrotoga mobilis SJ95 | 7 | 1 |
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ganE |
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Thermotoga maritima MSB8 Site: position = -51 score = 5.58738 sequence = ACGGTAACGTTTACGT Gene: TM1204: Galactose oligosaccharide ABC transporter, substrate binding periplasmic protein |
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Thermotoga sp. RQ2 Site: position = -51 score = 5.58738 sequence = ACGGTAACGTTTACGT Gene: TRQ2_1614: Galactose oligosaccharide ABC transporter, substrate binding periplasmic protein |
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Thermotoga neapolitana DSM 4359 Site: position = -62 score = 5.58738 sequence = ACGGTAACGTTTACGT Gene: CTN_1367: Galactose oligosaccharide ABC transporter, substrate binding periplasmic protein |
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Thermotoga petrophila RKU-1 Site: position = -75 score = 5.58738 sequence = ACGGTAACGTTTACGT Gene: Tpet_1552: Galactose oligosaccharide ABC transporter, substrate binding periplasmic protein |
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Thermotoga lettingae TMO Site: position = -32 score = 5.14045 sequence = ATGGTAACGTTTACGA Gene: Tlet_0910: Galactose oligosaccharide ABC transporter, substrate binding periplasmic protein |
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Galactose oligosaccharide ABC transporter, substrate binding periplasmic protein |
| ganF |
Gene: TM1203: Galactose oligosaccharide ABC transporter, permease protein |
Gene: TRQ2_1615: Galactose oligosaccharide ABC transporter, permease protein |
Gene: CTN_1368: Galactose oligosaccharide ABC transporter, permease protein |
Gene: Tpet_1553: Galactose oligosaccharide ABC transporter, permease protein |
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Gene: Tlet_0911: Galactose oligosaccharide ABC transporter, permease protein |
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Galactose oligosaccharide ABC transporter, permease protein |
| ganG |
Gene: TM1202: Galactose oligosaccharide ABC transporter, permease protein |
Gene: TRQ2_1616: Galactose oligosaccharide ABC transporter, permease protein |
Gene: CTN_1369: Galactose oligosaccharide ABC transporter, permease protein |
Gene: Tpet_1554: Galactose oligosaccharide ABC transporter, permease protein |
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Gene: Tlet_0912: Galactose oligosaccharide ABC transporter, permease protein |
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Galactose oligosaccharide ABC transporter, permease protein |
| ganA |
Gene: TM1201: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
Gene: TRQ2_1617: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
Gene: CTN_1370: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
Gene: Tpet_1555: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Gene: Tlet_0913: Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
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Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) |
| galR |
Gene: TM1200: Predicted regulator of galactoside utilization, LacI family |
Gene: TRQ2_1618: Predicted regulator of galactoside utilization, LacI family |
Gene: CTN_1371: Predicted regulator of galactoside utilization, LacI family |
Gene: Tpet_1556: Predicted regulator of galactoside utilization, LacI family |
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Thermotoga naphthophila RKU-10 Site: position = -65 score = 5.58738 sequence = ACGGTAACGTTTACGT Gene: Tnap_1576: Predicted regulator of galactoside utilization, LacI family |
2
Thermotoga lettingae TMO Gene: Tlet_1130: Predicted regulator of galactoside utilization, LacI family Gene: Tlet_0914: Predicted regulator of galactoside utilization, LacI family |
Gene: THA_1577: Predicted regulator of galactoside utilization, LacI family |
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Gene: Fnod_0418: Predicted regulator of galactoside utilization, LacI family |
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Petrotoga mobilis SJ95 Site: position = -20 score = 4.65624 sequence = TTGTTACCGTTAACGT Site: position = -14 score = 5.31994 sequence = CCGTTAACGTTAACAT Gene: Pmob_0832: Predicted regulator of galactoside utilization, LacI family |
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Predicted regulator of galactoside utilization, LacI family |
| galX |
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Thermotoga neapolitana DSM 4359 Site: position = -63 score = 4.98782 sequence = CTGTGAACGTTCACGG Gene: CTN_1372: Predicted galactoside ABC transporter type II, sugar-binding protein |
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Thermotoga lettingae TMO Site: position = -41 score = 5.44276 sequence = TCGGTAACGTTACCGT Gene: Tlet_1127: Predicted galactoside ABC transporter type II, sugar-binding protein |
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Fervidobacterium nodosum Rt17-B1 Site: position = -69 score = 4.67045 sequence = TCGGTTACGTTACCGG Gene: Fnod_0626: Predicted galactoside ABC transporter type II, sugar-binding protein |
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Predicted galactoside ABC transporter type II, sugar-binding protein |
| galY |
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Gene: CTN_1373: Predicted galactoside ABC transporter type II, permease protein 1 |
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Gene: Tlet_1128: Predicted galactoside ABC transporter type II, permease protein 1 |
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Gene: Fnod_0627: Predicted galactoside ABC transporter type II, permease protein 1 |
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Predicted galactoside ABC transporter type II, permease protein 1 |
| galZ |
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Gene: CTN_1374: Predicted galactoside ABC transporter type II, permease protein 2 |
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Gene: Tlet_1129: Predicted galactoside ABC transporter type II, permease protein 2 |
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Gene: Fnod_0628: Predicted galactoside ABC transporter type II, permease protein 2 |
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Predicted galactoside ABC transporter type II, permease protein 2 |
| ltpE |
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Thermotoga maritima MSB8 Site: position = -53 score = 5.41007 sequence = ACGTGAACGTTCACGG Gene: TM1199: Predicted galactoside ABC transporter, sugar-binding protein |
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Thermotoga sp. RQ2 Site: position = -52 score = 5.41007 sequence = ACGTGAACGTTCACGG Gene: TRQ2_1619: Predicted galactoside ABC transporter, sugar-binding protein |
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Thermotoga neapolitana DSM 4359 Site: position = 8 score = 4.93926 sequence = ACATAAACGTTCACGG Gene: CTN_1375: Predicted galactoside ABC transporter, sugar-binding protein |
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Predicted galactoside ABC transporter, sugar-binding protein |
| ltpF |
Gene: TM1198: Predicted galactoside ABC transporter, permease protein 1 |
Gene: TRQ2_1620: Predicted galactoside ABC transporter, permease protein 1 |
Gene: CTN_1376: Predicted galactoside ABC transporter, permease protein 1 |
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Predicted galactoside ABC transporter, permease protein 1 |
| ltpG |
Gene: TM1197: Predicted galactoside ABC transporter, permease protein 2 |
Gene: TRQ2_1621: Predicted galactoside ABC transporter, permease protein 2 |
Gene: CTN_1377: Predicted galactoside ABC transporter, permease protein 2 |
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Predicted galactoside ABC transporter, permease protein 2 |
| ltpK |
Gene: TM1196: Predicted galactoside ABC transporter, ATP-binding protein 1 |
Gene: TRQ2_1622: Predicted galactoside ABC transporter, ATP-binding protein 1 |
Gene: CTN_1378: Predicted galactoside ABC transporter, ATP-binding protein 1 |
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Predicted galactoside ABC transporter, ATP-binding protein 1 |
| lacA |
Gene: TM1195: Beta-galactosidase (EC 3.2.1.23), LacA family |
Gene: TRQ2_1623: Beta-galactosidase (EC 3.2.1.23), LacA family |
Gene: CTN_1379: Beta-galactosidase (EC 3.2.1.23), LacA family |
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Thermotoga petrophila RKU-1 Site: position = -28 score = 5.25846 sequence = CCGTGAACGTTCACGA Gene: Tpet_1557: Beta-galactosidase (EC 3.2.1.23), LacA family |
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Thermotoga naphthophila RKU-10 Site: position = -28 score = 5.25846 sequence = CCGTGAACGTTCACGA Gene: Tnap_1577: Beta-galactosidase (EC 3.2.1.23), LacA family |
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Fervidobacterium nodosum Rt17-B1 Site: position = -43 score = 5.02051 sequence = CCGGTAACGTTACCAA Gene: Fnod_0419: Beta-galactosidase (EC 3.2.1.23), LacA family |
Gene: Pmob_0829: Beta-galactosidase (EC 3.2.1.23), LacA family |
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Beta-galactosidase (EC 3.2.1.23), LacA family |
| ltpL |
Gene: TM1194: Predicted galactoside ABC transporter, ATP-binding protein 2 |
Gene: TRQ2_1624: Predicted galactoside ABC transporter, ATP-binding protein 2 |
Gene: CTN_1380: Predicted galactoside ABC transporter, ATP-binding protein 2 |
Gene: Tpet_1558: Predicted galactoside ABC transporter, ATP-binding protein 2 |
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Predicted galactoside ABC transporter, ATP-binding protein 2 |
| lacZ |
Gene: TM1193: Beta-galactosidase (EC 3.2.1.23), LacZ family |
Gene: TRQ2_1625: Beta-galactosidase (EC 3.2.1.23), LacZ family |
2
Thermotoga neapolitana DSM 4359 Gene: CTN_1382: Beta-galactosidase (EC 3.2.1.23), LacZ family Gene: CTN_1381: Beta-galactosidase (EC 3.2.1.23), LacZ family |
Gene: Tpet_1559: Beta-galactosidase (EC 3.2.1.23), LacZ family |
Gene: Tnap_1578: Beta-galactosidase (EC 3.2.1.23), LacZ family |
Gene: Tlet_0915: Beta-galactosidase (EC 3.2.1.23), LacZ family |
Gene: THA_1578: Beta-galactosidase (EC 3.2.1.23), LacZ family |
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Beta-galactosidase (EC 3.2.1.23), LacZ family |
| galA |
Gene: TM1192: Alpha-galactosidase (EC 3.2.1.22) |
Gene: TRQ2_1626: Alpha-galactosidase (EC 3.2.1.22) |
Gene: CTN_1383: Alpha-galactosidase (EC 3.2.1.22) |
Gene: Tpet_1560: Alpha-galactosidase (EC 3.2.1.22) |
Gene: Tnap_1579: Alpha-galactosidase (EC 3.2.1.22) |
Gene: Tlet_1443: Alpha-galactosidase (EC 3.2.1.22) |
Gene: THA_1053: Alpha-galactosidase (EC 3.2.1.22) |
Gene: Tmel_0423: Alpha-galactosidase (EC 3.2.1.22) |
Gene: Fnod_0417: Alpha-galactosidase (EC 3.2.1.22) |
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Alpha-galactosidase (EC 3.2.1.22) |
| galT |
Gene: TM1191: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: TRQ2_1627: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: CTN_1384: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Tpet_1561: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Tnap_1580: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Tlet_1103: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: THA_1580: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Tmel_0424: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Fnod_0416: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Pmob_0831: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: Kole_0949: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
| galK |
Gene: TM1190: Galactokinase (EC 2.7.1.6) |
Gene: TRQ2_1628: Galactokinase (EC 2.7.1.6) |
Gene: CTN_1385: Galactokinase (EC 2.7.1.6) |
Gene: Tpet_1562: Galactokinase (EC 2.7.1.6) |
Gene: Tnap_1581: Galactokinase (EC 2.7.1.6) |
Gene: Tlet_1104: Galactokinase (EC 2.7.1.6) |
Gene: THA_1581: Galactokinase (EC 2.7.1.6) |
Gene: Tmel_0425: Galactokinase (EC 2.7.1.6) |
Gene: Fnod_0415: Galactokinase (EC 2.7.1.6) |
Gene: Pmob_0830: Galactokinase (EC 2.7.1.6) |
Gene: Kole_0950: Galactokinase (EC 2.7.1.6) |
Galactokinase (EC 2.7.1.6) |
| lacE |
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Thermosipho africanus TCF52B Site: position = -60 score = 4.82333 sequence = TCGGTAACATTACCGG Gene: THA_1574: Predicted lactose ABC transporter, substrate binding protein |
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Gene: Pmob_0828: Predicted lactose ABC transporter, substrate binding protein |
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Predicted lactose ABC transporter, substrate binding protein |
| lacF |
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Gene: THA_1575: Predicted lactose ABC transporter, permease protein 1 |
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Gene: Pmob_0827: Predicted lactose ABC transporter, permease protein 1 |
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Predicted lactose ABC transporter, permease protein 1 |
| lacG |
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Gene: THA_1576: Predicted lactose ABC transporter, permease protein 2 |
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Gene: Pmob_0826: Predicted lactose ABC transporter, permease protein 2 |
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Predicted lactose ABC transporter, permease protein 2 |
| THA_1579 |
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Gene: THA_1579: alpha-galactosidase, putative |
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alpha-galactosidase, putative |
| Tlet_1102 |
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Thermotoga lettingae TMO Site: position = -2 score = 5.25548 sequence = TCGTGAACGTTTACGA Gene: Tlet_1102: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |