Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RhaR regulog to Thermotoga neapolitana DSM 4359

Reference regulog properties
Source regulog: RhaR - Thermotogales
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Rhamnose utilization; Rhamnose oligosaccharides utilization
Effector: Rhamnose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga neapolitana DSM 4359
Orthologous TF(s) CTN_1500
Regulated genes 3
Built upon 13 sites [see more]
Predicted regulatory interactions in Thermotoga neapolitana DSM 4359
Locus tag Position Score Sequence
Position: -57
Score: 6.7
Sequence: TTGTGATTAATTTATGATAA
Locus tag: CTN_1499
CTN_1499 -57 6.7 TTGTGATTAATTTATGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaM2
Ortholog function: L-rhamnose mutarotase, alternative
Thermotoga maritima MSB8 TM1070 -56 6.7 TTGTGATTAATTTATGATAA
Thermotoga neapolitana DSM 4359 CTN_1499 -57 6.7 TTGTGATTAATTTATGATAA
Thermotoga petrophila RKU-1 Tpet_1674 -56 6.7 TTGTGATTAATTTATGATAA
Thermotoga naphthophila RKU-10 Tnap_1697 -57 6.7 TTGTGATTAATTTATGATAA
Position: -72
Score: 4.4
Sequence: TTATCATAAATTAATCACAA
Locus tag: CTN_1500
CTN_1500 -72 4.4 TTATCATAAATTAATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaR
Ortholog function: Predicted regulator of rhamnose utilization, DeoR family
Thermotoga maritima MSB8 TM1069 -71 4.4 TTATCATAAATTAATCACAA
Thermotoga neapolitana DSM 4359 CTN_1500 -72 4.4 TTATCATAAATTAATCACAA
Thermotoga petrophila RKU-1 Tpet_1675 -29 4.4 TTATCATAAATTAATCACAA
Thermotoga naphthophila RKU-10 Tnap_1698 -72 4.4 TTATCATAAATTAATCACAA
Position: -54
Score: 5.6
Sequence: TATTGATACTATATTGATAG
Locus tag: CTN_1502
CTN_1502 -54 5.6 TATTGATACTATATTGATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rtpE
Ortholog function: Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component
Thermotoga neapolitana DSM 4359 CTN_1502 -54 5.6 TATTGATACTATATTGATAG
Thermotoga petrophila RKU-1 Tpet_1677 -78 5.7 AGTTGATATCATATTGATAA
-47 5.3 TTATGATAAATTTATGATCG