Regulog NrdR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Thermotogae |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Thermotogales
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 7 | 4 |
| Thermotoga sp. RQ2 | 7 | 4 |
| Thermotoga neapolitana DSM 4359 | 7 | 4 |
| Thermotoga petrophila RKU-1 | 7 | 4 |
| Thermotoga naphthophila RKU-10 | 7 | 4 |
| Thermotoga lettingae TMO | 3 | 2 |
| Thermosipho africanus TCF52B | 3 | 1 |
| Thermosipho melanesiensis BI429 | 3 | 1 |
| Fervidobacterium nodosum Rt17-B1 | 3 | 2 |
| Petrotoga mobilis SJ95 | 3 | 2 |
| Thermotogales bacterium TBF 19.5.1 | 3 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metE |
*
Thermotoga maritima MSB8 Site: position = -25 score = 4.28315 sequence = ATACAACAAATGGAGG Site: position = -55 score = 4.8302 sequence = ACACAACATGTGGTAT Gene: TM1286: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) |
*
Thermotoga sp. RQ2 Site: position = -25 score = 4.28315 sequence = ATACAACAAATGGAGG Site: position = -55 score = 4.8302 sequence = ACACAACATGTGGTAT Gene: TRQ2_1533: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) |
*
Thermotoga neapolitana DSM 4359 Site: position = -25 score = 4.28315 sequence = ATACAACAAATGGAGG Site: position = -55 score = 4.8302 sequence = ACACAACATGTGGTAT Gene: CTN_1290: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) |
*
Thermotoga petrophila RKU-1 Site: position = -55 score = 4.8302 sequence = ACACAACATGTGGTAT Site: position = -25 score = 4.28315 sequence = ATACAACAAATGGAGG Gene: Tpet_1489: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) |
*
Thermotoga naphthophila RKU-10 Site: position = -55 score = 4.8302 sequence = ACACAACATGTGGTAT Site: position = -25 score = 4.28315 sequence = ATACAACAAATGGAGG Gene: Tnap_1512: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) |
|
|
|
|
|
|
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 2. | ||||||||||||
| TM0152 |
*
Thermotoga maritima MSB8 Site: position = -109 score = 3.79203 sequence = ATACTACAAAATGTAC Site: position = -140 score = 5.28299 sequence = ATACAATATATGGTAT Gene: TM0152: Conserved hypothetical protein |
*
Thermotoga sp. RQ2 Site: position = -140 score = 4.57949 sequence = ATACAATATACGGTAT Site: position = -109 score = 4.17095 sequence = ATACTACAAAATGTAT Gene: TRQ2_0796: Conserved hypothetical protein |
*
Thermotoga neapolitana DSM 4359 Site: position = -141 score = 4.17018 sequence = CTACTTCATGTTGTGT Site: position = -110 score = 4.48855 sequence = ATACCATAAGTAGTGT Gene: CTN_0535: Conserved hypothetical protein |
*
Thermotoga petrophila RKU-1 Site: position = -109 score = 3.79203 sequence = ATACTACAAAATGTAC Site: position = -140 score = 4.57949 sequence = ATACAATATACGGTAT Gene: Tpet_0773: Conserved hypothetical protein |
*
Thermotoga naphthophila RKU-10 Site: position = -109 score = 3.79203 sequence = ATACTACAAAATGTAC Site: position = -140 score = 4.57949 sequence = ATACAATATACGGTAT Gene: Tnap_0782: Conserved hypothetical protein |
Gene: Tlet_0268: Conserved hypothetical protein |
Gene: THA_1698: Conserved hypothetical protein |
Gene: Tmel_1208: Conserved hypothetical protein |
Gene: Fnod_0424: Conserved hypothetical protein |
|
*
Thermotogales bacterium TBF 19.5.1 Site: position = -154 score = 4.46491 sequence = TTTCTATATGTTGTGA Site: position = -126 score = 4.14124 sequence = CTCCAATACATTGTGT Gene: Kole_0584: Conserved hypothetical protein |
Conserved hypothetical protein |
| CRON 3. | ||||||||||||
| nrdJ |
*
Thermotoga maritima MSB8 Site: position = -34 score = 5.26428 sequence = ACACAATATGTTGTTT Site: position = -64 score = 4.46072 sequence = CTACCACATGTTGAAT Gene: TM0118: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Thermotoga sp. RQ2 Site: position = -34 score = 5.01815 sequence = ACACAATATGTTGTTA Site: position = -64 score = 4.30619 sequence = CTACCAAATGTTGAAT Gene: TRQ2_0829: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Thermotoga neapolitana DSM 4359 Site: position = -7 score = 5.01815 sequence = AcACAATATgTTGTta Site: position = -37 score = 4.43706 sequence = CCACCACATGTTGAAT Gene: CTN_0571: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Thermotoga petrophila RKU-1 Site: position = -34 score = 5.01815 sequence = ACACAATATGTTGTTA Site: position = -64 score = 4.30619 sequence = CTACCAAATGTTGAAT Gene: Tpet_0806: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Thermotoga naphthophila RKU-10 Site: position = -64 score = 4.30619 sequence = CTACCAAATGTTGAAT Site: position = -34 score = 5.01815 sequence = ACACAATATGTTGTTA Gene: Tnap_0748: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Thermotoga lettingae TMO Site: position = -45 score = 4.65988 sequence = ATACAACTTGTAGTAT Site: position = -75 score = 5.41019 sequence = ACACAATATATAGTGT Gene: Tlet_0333: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
Gene: THA_675: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
Gene: Tmel_0606: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -98 score = 5.09526 sequence = ATACTATATATGGTAT Site: position = -128 score = 4.46193 sequence = TAACTATAAGTTGTGT Gene: Fnod_0421: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
*
Petrotoga mobilis SJ95 Site: position = -63 score = 4.59703 sequence = TTTCAATATATTGTCG Site: position = -32 score = 4.86148 sequence = GTACAATATATTGATT Gene: Pmob_1872: B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
|
B12-dependent ribonucleotide reductase (EC 1.17.4.1) |
| TM0119 |
Gene: TM0119: Predicted acetamidase/formamidase |
Gene: TRQ2_0828: Predicted acetamidase/formamidase |
Gene: CTN_0570: Predicted acetamidase/formamidase |
Gene: Tpet_0805: Predicted acetamidase/formamidase |
Gene: Tnap_0749: Predicted acetamidase/formamidase |
|
|
|
|
|
|
Predicted acetamidase/formamidase |
| TM0120 |
Gene: TM0120: Predicted oxidoreductase |
Gene: TRQ2_0827: Predicted oxidoreductase |
Gene: CTN_0569: Predicted oxidoreductase |
Gene: Tpet_0804: Predicted oxidoreductase |
Gene: Tnap_0750: Predicted oxidoreductase |
|
|
|
|
|
|
Predicted oxidoreductase |
| nrdD |
Gene: TM0385: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Gene: TRQ2_0550: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Gene: CTN_0312: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Gene: Tpet_0536: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Gene: Tnap_0176: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
*
Thermotoga lettingae TMO Site: position = -28 score = 5.26977 sequence = ATACTATATATAGTAT Site: position = -58 score = 4.7913 sequence = ATCCTATATATTGTAT Gene: Tlet_0432: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
*
Thermosipho africanus TCF52B Site: position = -91 score = 5.31477 sequence = AAACTATATATTGTAT Site: position = -59 score = 5.49055 sequence = ATACAATATATTGTGG Gene: THA_677: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
*
Thermosipho melanesiensis BI429 Site: position = -103 score = 5.43385 sequence = ACACAATATATAGTAT Site: position = -71 score = 5.49055 sequence = ATACAATATATTGTGG Gene: Tmel_0604: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Gene: Fnod_1249: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
*
Petrotoga mobilis SJ95 Site: position = -62 score = 4.96734 sequence = ACACAATAAATTGAGT Site: position = -94 score = 4.59932 sequence = ATACAATATACAGTGG Gene: Pmob_0978: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
*
Thermotogales bacterium TBF 19.5.1 Site: position = -35 score = 3.71916 sequence = TTACTATTTATAGGGA Site: position = -66 score = 4.89085 sequence = ATACTATATATAGTAC Gene: Kole_0530: Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
Anaerobic ribonucleoside-triphosphate reductase (EC 1.17.4.2) |
| nrdG |
*
Thermotoga maritima MSB8 Site: position = -55 score = 5.33586 sequence = CCACAATATATTGTGG Site: position = -85 score = 4.10199 sequence = CAACAATTTTTTGAGA Gene: TM0384: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
*
Thermotoga sp. RQ2 Site: position = -85 score = 4.10199 sequence = CAACAATTTTTTGAGA Site: position = -55 score = 5.33586 sequence = CCACAATATATTGTGG Gene: TRQ2_0549: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
*
Thermotoga neapolitana DSM 4359 Site: position = -54 score = 5.12129 sequence = CCACAACATATTGTGG Site: position = -84 score = 4.4711 sequence = CAACAATTTATTGAGA Gene: CTN_0313: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
*
Thermotoga petrophila RKU-1 Site: position = -61 score = 5.33586 sequence = CCACAATATATTGTGG Site: position = -91 score = 4.10199 sequence = CAACAATTTTTTGAGA Gene: Tpet_0535: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
*
Thermotoga naphthophila RKU-10 Site: position = -85 score = 4.10199 sequence = CAACAATTTTTTGAGA Site: position = -55 score = 5.33586 sequence = CCACAATATATTGTGG Gene: Tnap_0177: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
|
Gene: THA_676: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
Gene: Tmel_0605: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -91 score = 5.24612 sequence = ATACTATATATAGTGT Site: position = -61 score = 5.2404 sequence = ATTCAATATATTGTTT Gene: Fnod_1248: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
|
|
Anaerobic ribonucleoside-triphosphate reductase-activating protein |
| nrdX |
|
|
|
|
|
Gene: Tlet_0433: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
|
|
|
Gene: Pmob_0979: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
Gene: Kole_0529: Anaerobic ribonucleoside-triphosphate reductase-activating protein |
Anaerobic ribonucleoside-triphosphate reductase-activating protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |