Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RbsR regulog to Thermosipho africanus TCF52B

Reference regulog properties
Source regulog: RbsR - Thermotogales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermosipho africanus TCF52B
Orthologous TF(s) THA_673
Regulated genes 1
Built upon 15 sites [see more]
Predicted regulatory interactions in Thermosipho africanus TCF52B
Locus tag Position Score Sequence
Position: -42
Score: 6
Sequence: ATACGAAAACGTTTTCGAAA
Position: -30
Score: 5.9
Sequence: TTTCGAAAACGTTTTCTAGG
Locus tag: THA_669
THA_669 -42 6 ATACGAAAACGTTTTCGAAA
-30 5.9 TTTCGAAAACGTTTTCTAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsD
Ortholog function: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Thermotoga maritima MSB8 TM0959 -46 6.5 TTGTGAAAACGATTTCGAAA
-34 5.9 TTTCGAAAACGATTTCATCA
Thermotoga neapolitana DSM 4359 CTN_1617 32 6.5 TTGTGAAAACGATTTCGAAA
44 5.9 TTTCGAAAACGATTTCATCA
Thermotoga petrophila RKU-1 Tpet_1791 -56 6.5 TTGTGAAAACGATTTCGAAA
-44 6.6 TTTCGAAAACGTTTTCAAAG
Thermotoga naphthophila RKU-10 Tnap_1792 -56 6.5 TTGTGAAAACGATTTCGAAA
-44 6.6 TTTCGAAAACGTTTTCAAAG
Thermosipho africanus TCF52B THA_669 -42 6 ATACGAAAACGTTTTCGAAA
-30 5.9 TTTCGAAAACGTTTTCTAGG
Petrotoga mobilis SJ95 Pmob_0920 -43 6 TTCCGAAAACGTTTGCATAA
Thermotogales bacterium TBF 19.5.1 Kole_0600 -39 5 TCATGTAAACGTTTACGTAA
-27 5.6 TTACGTAAACGTTTTCAGGA
© 2009-2020 RegPrecise