Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Thermotoga lettingae TMO

Reference regulog properties
Source regulog: Rex - Thermotogales
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga lettingae TMO
Orthologous TF(s) Tlet_0332
Regulated genes 7
Built upon 114 sites [see more]
Predicted regulatory interactions in Thermotoga lettingae TMO
Locus tag Position Score Sequence
Position: 32
Score: 5.2
Sequence: TCGTGAAATAAATAACGA
Locus tag: Tlet_0957
Tlet_0957 32 5.2 TCGTGAAATAAATAACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM1420
Ortholog function: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Thermotoga maritima MSB8 TM1420 -45 5 TaGTGAAAAaTaTaACgt
Thermotoga sp. RQ2 TRQ2_1314 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga neapolitana DSM 4359 CTN_1072 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga petrophila RKU-1 Tpet_1372 -69 5 TaGTGAAAAaTaTaACgt
Thermotoga naphthophila RKU-10 Tnap_1390 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga lettingae TMO Tlet_0957 32 5.2 TcGTGAAAtaaaTaACgA
46 4.7 acGatAAAAaTaTCACgA
Thermosipho melanesiensis BI429 Tmel_0495 -43 5 TcGTGAAAAaTaTaACgt
-29 4.9 acGTtAtttaTTTCACgA
Position: -30
Score: 4
Sequence: CTGTTATAATTTAATCAA
Locus tag: Tlet_1000
Tlet_1000 -30 4 CTGTTATAATTTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnaX
Ortholog function: DNA polymerase III subunits gamma and tau
Thermotoga maritima MSB8 TM0686 -104 5.1 TaGTtAtttTTTTCACgA
Thermotoga sp. RQ2 TRQ2_0243 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga neapolitana DSM 4359 CTN_1900 -103 5.1 TAGTTATTTTTTTCACGA
Thermotoga petrophila RKU-1 Tpet_0245 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga naphthophila RKU-10 Tnap_0482 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga lettingae TMO Tlet_1000 -29 4 cTGTtAtAATTTaatCAA
Thermotogales bacterium TBF 19.5.1 Kole_2018 -90 5.4 TaGTtAAtAaTTTCACAA
Position: -33
Score: 4.9
Sequence: TCGATATTTTTTTCACGA
Locus tag: Tlet_1312
Tlet_1312 -33 4.9 TCGATATTTTTTTCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM0983
Ortholog function: conserved hypothetical protein, SirA family
Thermotoga maritima MSB8 TM0983 -41 5.1 TTGAGATTTTTTTCACAA
Thermotoga sp. RQ2 TRQ2_1812 -62 4.7 ATGTTATCATTTTCACAA
-41 5.1 TTGAGATTTTTTTCACAA
Thermotoga neapolitana DSM 4359 CTN_1595 -32 5.1 TTGAGATTTTTTTCACAA
Thermotoga petrophila RKU-1 Tpet_1758 -62 4.7 ATGTTATCATTTTCACAA
-41 5.1 TTGAGATTTTTTTCACAA
Thermotoga naphthophila RKU-10 Tnap_1770 -63 4.7 ATGTTATCATTTTCACAA
Thermotoga lettingae TMO Tlet_1312 -34 4.9 TcGatAtttTTTTCACgA
Position: -42
Score: 4.7
Sequence: ATGTGAATACTTTAACAA
Locus tag: Tlet_1350
Tlet_1350 -42 4.7 ATGTGAATACTTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycD
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0201 24 5.3 TTGAGAAATTTATCACAA
Thermotoga sp. RQ2 TRQ2_0747 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga neapolitana DSM 4359 CTN_0485 0 5.1 TTGAGAATTTTATCACAA
Thermotoga petrophila RKU-1 Tpet_0723 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga naphthophila RKU-10 Tnap_0831 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga lettingae TMO Tlet_1350 -42 4.7 ATGTGAATACTTTAACAA
Thermosipho africanus TCF52B THA_1808 -106 4.7 TTGTGAtAtaaTTtACtt
Thermosipho melanesiensis BI429 Tmel_1601 -108 4.7 TTGTGAtAtaaTTtACtt
Thermotogales bacterium TBF 19.5.1 Kole_0172 -57 4.7 TTGATAGAAAATTCACAA
Position: -30
Score: 4.8
Sequence: TTGTGAATTTATTAACAG
Locus tag: Tlet_1522
Tlet_1522 -30 4.8 TTGTGAATTTATTAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycA
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0012 -27 4.3 aTGTGAAAAaaaTatCAg
-2 5 TTGTGAAAAaaTTCcCgA
Thermotoga sp. RQ2 TRQ2_0933 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga neapolitana DSM 4359 CTN_0686 -61 4.3 ATGTGAAAAAAATATCAG
-36 5.2 TTGTGAAAAAATTCTCGA
Thermotoga petrophila RKU-1 Tpet_0911 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga naphthophila RKU-10 Tnap_0643 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga lettingae TMO Tlet_1522 -30 4.8 TTGTGAATTTATTAACAG
Thermosipho africanus TCF52B THA_782 -49 4.9 TcGTGAAAATaaTaACgt
-35 5 acGTtAtAtTTTTCACgA
Thermosipho africanus TCF52B THA_1559 -65 4.6 aaGTGAAAtTTTTtACtt
12 4.2 TTGTGAAAAacaTgtCgA
Thermosipho melanesiensis BI429 Tmel_1172 -68 4.5 aaGTGAAttTTTTtACtt
9 4.2 TTGTGAAAAacaTgtCgA
Fervidobacterium nodosum Rt17-B1 Fnod_0995 -38 4.8 ATGTTATAATAATCACGA
Petrotoga mobilis SJ95 Pmob_0726 -133 5.3 ATGTGAATATTTTCACAA
Thermotogales bacterium TBF 19.5.1 Kole_0180 -71 4.6 aaGTGAAAtaaaTaACAt
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