Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Thermotoga naphthophila RKU-10

Reference regulog properties
Source regulog: Rex - Thermotogales
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga naphthophila RKU-10
Orthologous TF(s) Tnap_0799
Regulated genes 10
Built upon 114 sites [see more]
Predicted regulatory interactions in Thermotoga naphthophila RKU-10
Locus tag Position Score Sequence
Position: -32
Score: 4.8
Sequence: TCGTGAAAAAATTCTCTT
Locus tag: Tnap_0182
Tnap_0182 -32 4.8 TCGTGAAAAAATTCTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Thermotoga maritima MSB8 TM0379 -32 5 TCGTGAAAAATTTCTCTT
Thermotoga sp. RQ2 TRQ2_0544 -32 5 TCGTGAAAAATTTCTCTT
Thermotoga neapolitana DSM 4359 CTN_0317 -34 4.6 TTGTGAAATCTTTCTCTT
Thermotoga petrophila RKU-1 Tpet_0530 -32 4.8 TCGTGAAAAAATTCTCTT
Thermotoga naphthophila RKU-10 Tnap_0182 -32 4.8 TCGTGAAAAAATTCTCTT
Thermosipho melanesiensis BI429 Tmel_1229 -59 4.9 TTGTGAAAAATATATCAT
Position: -44
Score: 5
Sequence: TTGTGAAAAAATTCCCGA
Locus tag: Tnap_0643
Tnap_0643 -44 5 TTGTGAAAAAATTCCCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycA
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0012 -27 4.3 aTGTGAAAAaaaTatCAg
-2 5 TTGTGAAAAaaTTCcCgA
Thermotoga sp. RQ2 TRQ2_0933 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga neapolitana DSM 4359 CTN_0686 -61 4.3 ATGTGAAAAAAATATCAG
-36 5.2 TTGTGAAAAAATTCTCGA
Thermotoga petrophila RKU-1 Tpet_0911 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga naphthophila RKU-10 Tnap_0643 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga lettingae TMO Tlet_1522 -30 4.8 TTGTGAATTTATTAACAG
Thermosipho africanus TCF52B THA_782 -49 4.9 TcGTGAAAATaaTaACgt
-35 5 acGTtAtAtTTTTCACgA
Thermosipho africanus TCF52B THA_1559 -65 4.6 aaGTGAAAtTTTTtACtt
12 4.2 TTGTGAAAAacaTgtCgA
Thermosipho melanesiensis BI429 Tmel_1172 -68 4.5 aaGTGAAttTTTTtACtt
9 4.2 TTGTGAAAAacaTgtCgA
Fervidobacterium nodosum Rt17-B1 Fnod_0995 -38 4.8 ATGTTATAATAATCACGA
Petrotoga mobilis SJ95 Pmob_0726 -133 5.3 ATGTGAATATTTTCACAA
Thermotogales bacterium TBF 19.5.1 Kole_0180 -71 4.6 aaGTGAAAtaaaTaACAt
Position: -30
Score: 4.6
Sequence: TTGTTATAATAGTAACAA
Locus tag: Tnap_0810
Tnap_0810 -30 4.6 TTGTTATAATAGTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM0179
Ortholog function: hypothetical protein
Thermotoga maritima MSB8 TM0179 -30 4.6 TTGTTATAATAGTAACAA
Thermotoga sp. RQ2 TRQ2_0769 -30 4.6 TTGTTATAATAGTAACAA
Thermotoga neapolitana DSM 4359 CTN_0508 -30 4.4 TTGTTATAATGATATCAA
Thermotoga petrophila RKU-1 Tpet_0745 -30 4.6 TTGTTATAATAGTAACAA
Thermotoga naphthophila RKU-10 Tnap_0810 -30 4.6 TTGTTATAATAGTAACAA
Thermosipho africanus TCF52B THA_713 -35 4.9 TTGTGAATTTTTGCACTA
Fervidobacterium nodosum Rt17-B1 Fnod_0241 -86 4.6 TAGTGAAAAACTTGACAA
Position: -54
Score: 5.3
Sequence: TTGAGAAATTTATCACAA
Locus tag: Tnap_0831
Tnap_0831 -54 5.3 TTGAGAAATTTATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycD
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0201 24 5.3 TTGAGAAATTTATCACAA
Thermotoga sp. RQ2 TRQ2_0747 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga neapolitana DSM 4359 CTN_0485 0 5.1 TTGAGAATTTTATCACAA
Thermotoga petrophila RKU-1 Tpet_0723 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga naphthophila RKU-10 Tnap_0831 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga lettingae TMO Tlet_1350 -42 4.7 ATGTGAATACTTTAACAA
Thermosipho africanus TCF52B THA_1808 -106 4.7 TTGTGAtAtaaTTtACtt
Thermosipho melanesiensis BI429 Tmel_1601 -108 4.7 TTGTGAtAtaaTTtACtt
Thermotogales bacterium TBF 19.5.1 Kole_0172 -57 4.7 TTGATAGAAAATTCACAA
Position: -30
Score: 5.3
Sequence: TTGTGAAATTTTTGACGA
Locus tag: Tnap_0857
Tnap_0857 -30 5.3 TTGTGAAATTTTTGACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycE
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Thermotoga sp. RQ2 TRQ2_0721 -30 5.3 TTGTGAAATTTTTGACGA
Thermotoga neapolitana DSM 4359 CTN_0459 8 5.3 TTGTGAAATTTTTGACGA
Thermotoga petrophila RKU-1 Tpet_0697 -30 5.3 TTGTGAAATTTTTGACGA
Thermotoga naphthophila RKU-10 Tnap_0857 -30 5.3 TTGTGAAATTTTTGACGA
Thermotoga lettingae TMO Tlet_1519 -30 4.8 TTGTGAATTTATTAACAG
Thermosipho melanesiensis BI429 Tmel_1169 -68 4.5 aaGTGAAttTTTTtACtt
9 4.2 TTGTGAAAAacaTgtCgA
Fervidobacterium nodosum Rt17-B1 Fnod_0992 -38 4.8 ATGTTATAATAATCACGA
Petrotoga mobilis SJ95 Pmob_1151 -36 5.4 TAGTGAAAATATTAACAA
Thermotogales bacterium TBF 19.5.1 Kole_0183 -71 4.6 aaGTGAAAtaaaTaACAt
Position: -40
Score: 4.9
Sequence: ATGATAAAATTATCACAA
Locus tag: Tnap_1013
Tnap_1013 -40 4.9 ATGATAAAATTATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cas6
Ortholog function: CRISPR/Cas system-associated RAMP superfamily protein Cas6
Thermotoga maritima MSB8 TM1814 -40 4.9 ATGATAAAATTATCACAA
Thermotoga sp. RQ2 TRQ2_1007 -40 4.9 ATGATAAAATTATCACAA
Thermotoga neapolitana DSM 4359 CTN_0700 117 4.9 aTGatAAAATTaTCACAA
Thermotoga petrophila RKU-1 Tpet_1099 -40 4.9 ATGATAAAATTATCACAA
Thermotoga naphthophila RKU-10 Tnap_1013 -40 4.9 ATGATAAAATTATCACAA
Position: -51
Score: 5
Sequence: TAGTGAAAAATATAACGT
Locus tag: Tnap_1390
Tnap_1390 -51 5 TAGTGAAAAATATAACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM1420
Ortholog function: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Thermotoga maritima MSB8 TM1420 -45 5 TaGTGAAAAaTaTaACgt
Thermotoga sp. RQ2 TRQ2_1314 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga neapolitana DSM 4359 CTN_1072 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga petrophila RKU-1 Tpet_1372 -69 5 TaGTGAAAAaTaTaACgt
Thermotoga naphthophila RKU-10 Tnap_1390 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga lettingae TMO Tlet_0957 32 5.2 TcGTGAAAtaaaTaACgA
46 4.7 acGatAAAAaTaTCACgA
Thermosipho melanesiensis BI429 Tmel_0495 -43 5 TcGTGAAAAaTaTaACgt
-29 4.9 acGTtAtttaTTTCACgA
Position: -47
Score: 5.1
Sequence: TAGTTAAAAAAATAACAA
Locus tag: Tnap_1403
Tnap_1403 -47 5.1 TAGTTAAAAAAATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sat
Ortholog function: Serine aminotransferase (EC 2.6.5.1)
Thermotoga maritima MSB8 TM1400 -47 5.1 TAGTTAAAAAAATAACAA
Thermotoga sp. RQ2 TRQ2_1429 -47 5.1 TAGTTAAAAAAATAACAA
Thermotoga neapolitana DSM 4359 CTN_1191 -47 5.1 TAGTTAAAAAAATAACAA
Thermotoga petrophila RKU-1 Tpet_1383 -47 5.1 TAGTTAAAAAAATAACAA
Thermotoga naphthophila RKU-10 Tnap_1403 -47 5.1 TAGTTAAAAAAATAACAA
Position: -63
Score: 4.7
Sequence: ATGTTATCATTTTCACAA
Locus tag: Tnap_1770
Tnap_1770 -63 4.7 ATGTTATCATTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM0983
Ortholog function: conserved hypothetical protein, SirA family
Thermotoga maritima MSB8 TM0983 -41 5.1 TTGAGATTTTTTTCACAA
Thermotoga sp. RQ2 TRQ2_1812 -62 4.7 ATGTTATCATTTTCACAA
-41 5.1 TTGAGATTTTTTTCACAA
Thermotoga neapolitana DSM 4359 CTN_1595 -32 5.1 TTGAGATTTTTTTCACAA
Thermotoga petrophila RKU-1 Tpet_1758 -62 4.7 ATGTTATCATTTTCACAA
-41 5.1 TTGAGATTTTTTTCACAA
Thermotoga naphthophila RKU-10 Tnap_1770 -63 4.7 ATGTTATCATTTTCACAA
Thermotoga lettingae TMO Tlet_1312 -34 4.9 TcGatAtttTTTTCACgA
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