Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Fervidobacterium nodosum Rt17-B1

Reference regulog properties
Source regulog: Rex - Thermotogales
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Thermotogae
Propagated regulon:
Target genome Fervidobacterium nodosum Rt17-B1
Orthologous TF(s) Fnod_0423
Regulated genes 11
Built upon 114 sites [see more]
Predicted regulatory interactions in Fervidobacterium nodosum Rt17-B1
Locus tag Position Score Sequence
Position: -125
Score: 5
Sequence: TTGTGAAAAAAATAACGT
Locus tag: Fnod_0227
Fnod_0227 -125 5 TTGTGAAAAAAATAACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hydC
Ortholog function: Fe-hydrogenase, gamma subunit, FeS cluster containing
Thermotoga maritima MSB8 TM1424 -45 5 TaGTGAAAAaTaTaACgt
Thermotoga sp. RQ2 TRQ2_1317 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga neapolitana DSM 4359 CTN_1069 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga petrophila RKU-1 Tpet_1369 -69 5 TaGTGAAAAaTaTaACgt
Thermotoga lettingae TMO Tlet_0954 32 5.2 TcGTGAAAtaaaTaACgA
46 4.7 acGatAAAAaTaTCACgA
Thermosipho africanus TCF52B THA_785 -49 4.9 TcGTGAAAATaaTaACgt
-35 5 acGTtAtAtTTTTCACgA
Thermosipho melanesiensis BI429 Tmel_0492 -43 5 TcGTGAAAAaTaTaACgt
-29 4.9 acGTtAtttaTTTCACgA
Fervidobacterium nodosum Rt17-B1 Fnod_0227 -125 5 TTGTGAAAAaaaTaACgt
-111 4.7 acGTtAtAAaaaTaACAA
Position: -86
Score: 4.6
Sequence: TAGTGAAAAACTTGACAA
Locus tag: Fnod_0241
Fnod_0241 -86 4.6 TAGTGAAAAACTTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM0179
Ortholog function: hypothetical protein
Thermotoga maritima MSB8 TM0179 -30 4.6 TTGTTATAATAGTAACAA
Thermotoga sp. RQ2 TRQ2_0769 -30 4.6 TTGTTATAATAGTAACAA
Thermotoga neapolitana DSM 4359 CTN_0508 -30 4.4 TTGTTATAATGATATCAA
Thermotoga petrophila RKU-1 Tpet_0745 -30 4.6 TTGTTATAATAGTAACAA
Thermotoga naphthophila RKU-10 Tnap_0810 -30 4.6 TTGTTATAATAGTAACAA
Thermosipho africanus TCF52B THA_713 -35 4.9 TTGTGAATTTTTGCACTA
Fervidobacterium nodosum Rt17-B1 Fnod_0241 -86 4.6 TAGTGAAAAACTTGACAA
Position: -52
Score: 5.3
Sequence: TCGTGAAATAATTAACGA
Locus tag: Fnod_0319
Fnod_0319 -52 5.3 TCGTGAAATAATTAACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM1420
Ortholog function: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Fervidobacterium nodosum Rt17-B1 Fnod_0319 -52 5.3 TcGTGAAAtaaTTaACgA
Position: -66
Score: 4.5
Sequence: AAGTGAAAAAAATAACTT
Locus tag: Fnod_0587
Fnod_0587 -66 4.5 AAGTGAAAAAAATAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE2
Ortholog function: NADH oxidase (EC 1.6.99.3)
Thermosipho africanus TCF52B THA_982 -38 4.8 AAGTTAAATTATTCTCAA
Thermosipho melanesiensis BI429 Tmel_0141 -31 5.2 TAGTTAAAAAAATCACAA
Fervidobacterium nodosum Rt17-B1 Fnod_0587 -65 4.5 aaGTGAAAAaaaTaACtt
Position: -77
Score: 4.7
Sequence: TTGTACAATTTTTCACGA
Locus tag: Fnod_0740
Fnod_0740 -77 4.7 TTGTACAATTTTTCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap
Ortholog function: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Thermotoga maritima MSB8 TM0688 -104 5.1 TaGTtAtttTTTTCACgA
Thermotoga neapolitana DSM 4359 CTN_1898 -103 5.1 TAGTTATTTTTTTCACGA
Thermotoga petrophila RKU-1 Tpet_0243 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga naphthophila RKU-10 Tnap_0484 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga lettingae TMO Tlet_0998 -29 4 cTGTtAtAATTTaatCAA
Thermosipho africanus TCF52B THA_1607 -44 5.2 TaGTaAAAtTTTTCACgA
Thermosipho melanesiensis BI429 Tmel_1266 -45 5.2 TaGTaAAAtTTTTCACgA
Fervidobacterium nodosum Rt17-B1 Fnod_0740 -77 4.7 TTGTacAAtTTTTCACgA
Petrotoga mobilis SJ95 Pmob_1445 -43 4.6 aaGaGAAAAaaaTaACAA
Thermotogales bacterium TBF 19.5.1 Kole_2020 -90 5.4 TaGTtAAtAaTTTCACAA
Position: -38
Score: 4.8
Sequence: ATGTTATAATAATCACGA
Locus tag: Fnod_0995
Fnod_0995 -38 4.8 ATGTTATAATAATCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycA
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0012 -27 4.3 aTGTGAAAAaaaTatCAg
-2 5 TTGTGAAAAaaTTCcCgA
Thermotoga sp. RQ2 TRQ2_0933 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga neapolitana DSM 4359 CTN_0686 -61 4.3 ATGTGAAAAAAATATCAG
-36 5.2 TTGTGAAAAAATTCTCGA
Thermotoga petrophila RKU-1 Tpet_0911 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga naphthophila RKU-10 Tnap_0643 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga lettingae TMO Tlet_1522 -30 4.8 TTGTGAATTTATTAACAG
Thermosipho africanus TCF52B THA_782 -49 4.9 TcGTGAAAATaaTaACgt
-35 5 acGTtAtAtTTTTCACgA
Thermosipho africanus TCF52B THA_1559 -65 4.6 aaGTGAAAtTTTTtACtt
12 4.2 TTGTGAAAAacaTgtCgA
Thermosipho melanesiensis BI429 Tmel_1172 -68 4.5 aaGTGAAttTTTTtACtt
9 4.2 TTGTGAAAAacaTgtCgA
Fervidobacterium nodosum Rt17-B1 Fnod_0995 -38 4.8 ATGTTATAATAATCACGA
Petrotoga mobilis SJ95 Pmob_0726 -133 5.3 ATGTGAATATTTTCACAA
Thermotogales bacterium TBF 19.5.1 Kole_0180 -71 4.6 aaGTGAAAtaaaTaACAt
Position: -78
Score: 5
Sequence: AAGTGATTTTTTTCACAA
Locus tag: Fnod_1174
Fnod_1174 -78 5 AAGTGATTTTTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhA
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Thermosipho africanus TCF52B THA_374 -95 5.3 TcGTGAAAAaaTTaACgA
-29 5.1 TTGTGAAAATATTCACAG
Thermosipho melanesiensis BI429 Tmel_0139 -95 4.7 ccGTGAAAAaaaTaACgA
-29 5.1 TTGTGAAAATATTCACAG
Fervidobacterium nodosum Rt17-B1 Fnod_1174 -78 5 AAGTGATTTTTTTCACAA
Thermotogales bacterium TBF 19.5.1 Kole_0742 -111 4.8 cTGTGAAAAaaTTCACAt
-33 5.2 AAGTGAAAAAATTCACAA
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