Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of UxaR regulog to Thermotoga petrophila RKU-1

Reference regulog properties
Source regulog: UxaR - Thermotogales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization; Pectin utilization
Effector:
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga petrophila RKU-1
Orthologous TF(s) Tpet_0481
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Thermotoga petrophila RKU-1
Locus tag Position Score Sequence
Position: -28
Score: 6.4
Sequence: TGAAACATCAAACATCT
Locus tag: Tpet_0484
Tpet_0484 -28 6.4 TGAAACATCAAACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldH
Ortholog function: alcohol dehydrogenase, zinc-containing
Thermotoga maritima MSB8 TM0436 -25 6.4 TGAAACATCAAACATCT
Thermotoga sp. RQ2 TRQ2_0499 -29 6.4 TGAAACATCAAACATCT
Thermotoga petrophila RKU-1 Tpet_0484 -28 6.4 TGAAACATCAAACATCT
Position: -39
Score: 6.2
Sequence: TGAAATATCAAACATCT
Locus tag: Tpet_0485
Tpet_0485 -39 6.2 TGAAATATCAAACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Tpet_0485
Ortholog function: Predicted sugar ABC transporter, periplasmic sugar-binding protein
Thermotoga petrophila RKU-1 Tpet_0485 -39 6.2 TGAAATATCAAACATCT
Position: -29
Score: 6.2
Sequence: TTAAACATCACATATCA
Locus tag: Tpet_0858
Tpet_0858 -29 6.2 TTAAACATCACATATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgA
Ortholog function: 2-dehydro-3-deoxyphosphogluconate aldolase
Thermotoga maritima MSB8 TM0066 -23 6 TTAAATATCACATATCA
Thermotoga sp. RQ2 TRQ2_0881 -29 6.2 TTAAACATCACATATCA
Thermotoga neapolitana DSM 4359 CTN_0627 -384 6.2 TTAAACATCAAATATCA
Thermotoga petrophila RKU-1 Tpet_0858 -29 6.2 TTAAACATCACATATCA
Thermotoga naphthophila RKU-10 Tnap_0696 -29 6.2 TTAAACATCACATATCA