Regulog KdgR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - KdgR
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 19 | 6 |
| Thermotoga sp. RQ2 | 10 | 4 |
| Thermotoga neapolitana DSM 4359 | 11 | 4 |
| Thermotoga petrophila RKU-1 | 19 | 6 |
| Thermotoga naphthophila RKU-10 | 19 | 6 |
| Thermotoga lettingae TMO | ||
| Thermosipho africanus TCF52B | ||
| Thermosipho melanesiensis BI429 | ||
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | ||
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| uxaC |
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Thermotoga maritima MSB8 Site: position = -32 score = 5.88409 sequence = TGAGAAAACCATTTTCAAA Gene: TM0064: Uronate isomerase (EC 5.3.1.12) |
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Thermotoga sp. RQ2 Site: position = -32 score = 5.88409 sequence = TGAGAAAACCATTTTCAAA Gene: TRQ2_0883: Uronate isomerase (EC 5.3.1.12) |
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Thermotoga neapolitana DSM 4359 Site: position = -33 score = 6.1257 sequence = TGAGAAAATCATTTTCACA Gene: CTN_0630: Uronate isomerase (EC 5.3.1.12) |
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Thermotoga petrophila RKU-1 Site: position = -32 score = 5.88409 sequence = TGAGAAAACCATTTTCAAA Gene: Tpet_0860: Uronate isomerase (EC 5.3.1.12) |
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Thermotoga naphthophila RKU-10 Site: position = -32 score = 5.88409 sequence = TGAGAAAACCATTTTCAAA Gene: Tnap_0694: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| TM0063 |
Gene: TM0063: hypothetical protein |
Gene: TRQ2_0884: hypothetical protein |
Gene: CTN_0631: hypothetical protein |
Gene: Tpet_0861: hypothetical protein |
Gene: Tnap_0693: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||
| CTN_1813 |
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Thermotoga neapolitana DSM 4359 Site: position = -191 score = 5.86065 sequence = TGTGAAAAAGGCTTTCAAA Gene: CTN_0633: Transposase, IS605 OrfB family |
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Transposase, IS605 OrfB family |
| xtpF |
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Thermotoga maritima MSB8 Site: position = -199 score = 6.01104 sequence = TGTGAAAGGAACTTTCAAA Gene: TM0060: Xylan oligosaccharide ABC transporter, permease component 1 |
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Thermotoga sp. RQ2 Site: position = -199 score = 6.01104 sequence = TGTGAAAGGAACTTTCAAA Gene: TRQ2_0886: Xylan oligosaccharide ABC transporter, permease component 1 |
Gene: CTN_0634: Xylan oligosaccharide ABC transporter, permease component 1 |
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Thermotoga petrophila RKU-1 Site: position = -199 score = 6.01104 sequence = TGTGAAAGGAACTTTCAAA Gene: Tpet_0864: Xylan oligosaccharide ABC transporter, permease component 1 |
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Thermotoga naphthophila RKU-10 Site: position = -198 score = 6.01104 sequence = TGTGAAAGGAACTTTCAAA Gene: Tnap_0690: Xylan oligosaccharide ABC transporter, permease component 1 |
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Xylan oligosaccharide ABC transporter, permease component 1 |
| xtpG |
Gene: TM0059: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: TRQ2_0887: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: CTN_0635: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: Tpet_0865: Xylan oligosaccharide ABC transporter, permease component 2 |
Gene: Tnap_0689: Xylan oligosaccharide ABC transporter, permease component 2 |
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Xylan oligosaccharide ABC transporter, permease component 2 |
| xtpK |
Gene: TM0058: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: TRQ2_0888: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: CTN_0636: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: Tpet_0866: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
Gene: Tnap_0688: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
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Xylan oligosaccharide ABC transporter, ATP-binding protein 1 |
| xtpL |
Gene: TM0057: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: TRQ2_0889: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: CTN_0637: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: Tpet_0867: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
Gene: Tnap_0687: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
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Xylan oligosaccharide ABC transporter, ATP-binding protein 2 |
| xtpE |
Gene: TM0056: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: TRQ2_0890: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: CTN_0638: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: Tpet_0868: Xylan oligosaccharide ABC transporter, substrate-binding component |
Gene: Tnap_0686: Xylan oligosaccharide ABC transporter, substrate-binding component |
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Xylan oligosaccharide ABC transporter, substrate-binding component |
| aguA |
Gene: TM0055: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: TRQ2_0891: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: CTN_0639: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: Tpet_0869: Alpha-glucuronidase (EC 3.2.1.139) |
Gene: Tnap_0685: Alpha-glucuronidase (EC 3.2.1.139) |
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Alpha-glucuronidase (EC 3.2.1.139) |
| CRON 3. | ||||||||||||
| xynA1 |
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Thermotoga maritima MSB8 Site: position = -138 score = 6.01104 sequence = TTTGAAAGTTCCTTTCACA Gene: TM0061: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga sp. RQ2 Site: position = -138 score = 6.01104 sequence = TTTGAAAGTTCCTTTCACA Gene: TRQ2_0885: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga neapolitana DSM 4359 Site: position = -91 score = 5.86065 sequence = TTTGAAAGCCTTTTTCACA Gene: CTN_0632: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga petrophila RKU-1 Site: position = -139 score = 6.01104 sequence = TTTGAAAGTTCCTTTCACA Gene: Tpet_0863: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Thermotoga naphthophila RKU-10 Site: position = -138 score = 6.01104 sequence = TTTGAAAGTTCCTTTCACA Gene: Tnap_0691: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
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Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) |
| cenC |
Gene: TM0062: Carbohydrate-binding CenC domain protein |
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Gene: Tpet_0862: Carbohydrate-binding CenC domain protein |
Gene: Tnap_0692: Carbohydrate-binding CenC domain protein |
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Carbohydrate-binding CenC domain protein |
| CRON 4. | ||||||||||||
| kdgR |
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Thermotoga maritima MSB8 Site: position = -88 score = 5.88409 sequence = TTTGAAAATGGTTTTCTCA Gene: TM0065: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
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Thermotoga sp. RQ2 Site: position = -88 score = 5.88409 sequence = TTTGAAAATGGTTTTCTCA Gene: TRQ2_0882: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
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Thermotoga neapolitana DSM 4359 Site: position = -48 score = 6.1257 sequence = TGTGAAAATGATTTTCTCA Gene: CTN_0629: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
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Thermotoga petrophila RKU-1 Site: position = -88 score = 5.88409 sequence = TTTGAAAATGGTTTTCTCA Gene: Tpet_0859: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
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Thermotoga naphthophila RKU-10 Site: position = -88 score = 5.88409 sequence = TTTGAAAATGGTTTTCTCA Gene: Tnap_0695: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
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Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
| CRON 5. | ||||||||||||
| xloE |
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Thermotoga maritima MSB8 Site: position = -135 score = 5.19291 sequence = TTTGAAATAATCTTTTACA Gene: TM0071: Xylose oligosaccharides ABC transporter, sugar-binding protein |
Gene: TRQ2_0876: Xylose oligosaccharides ABC transporter, sugar-binding protein |
Gene: CTN_0622: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga petrophila RKU-1 Site: position = -136 score = 5.19291 sequence = TTTGAAATAATCTTTTACA Gene: Tpet_0853: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Thermotoga naphthophila RKU-10 Site: position = -135 score = 5.19291 sequence = TTTGAAATAATCTTTTACA Gene: Tnap_0701: Xylose oligosaccharides ABC transporter, sugar-binding protein |
Gene: Tlet_0350: Xylose oligosaccharides ABC transporter, sugar-binding protein |
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Xylose oligosaccharides ABC transporter, sugar-binding protein |
| xloF |
Gene: TM0072: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: TRQ2_0875: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: CTN_0621: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: Tpet_0852: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: Tnap_0702: Xylose oligosaccharides ABC transporter, permease protein 1 |
Gene: Tlet_0351: Xylose oligosaccharides ABC transporter, permease protein 1 |
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Xylose oligosaccharides ABC transporter, permease protein 1 |
| xloG |
Gene: TM0073: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: TRQ2_0874: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: CTN_0620: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: Tpet_0851: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: Tnap_0703: Xylose oligosaccharides ABC transporter, permease protein 2 |
Gene: Tlet_0352: Xylose oligosaccharides ABC transporter, permease protein 2 |
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Xylose oligosaccharides ABC transporter, permease protein 2 |
| xloK |
Gene: TM0074: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: TRQ2_0873: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: CTN_0619: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: Tpet_0850: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: Tnap_0704: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
Gene: Tlet_0353: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
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Xylose oligosaccharides ABC transporter, ATP-binding protein 1 |
| xloL |
Gene: TM0075: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: TRQ2_0872: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: CTN_0618: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: Tpet_0849: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: Tnap_0705: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
Gene: Tlet_0354: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
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Xylose oligosaccharides ABC transporter, ATP-binding protein 2 |
| xyl3 |
Gene: TM0076: Beta-xylosidase (EC 3.2.1.37) |
Gene: TRQ2_0871: Beta-xylosidase (EC 3.2.1.37) |
Gene: CTN_0616: Beta-xylosidase (EC 3.2.1.37) |
Gene: Tpet_0848: Beta-xylosidase (EC 3.2.1.37) |
Gene: Tnap_0706: Beta-xylosidase (EC 3.2.1.37) |
Gene: Tlet_0355: Beta-xylosidase (EC 3.2.1.37) |
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Beta-xylosidase (EC 3.2.1.37) |
| axeA |
Gene: TM0077: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: TRQ2_0870: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: CTN_0615: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: Tpet_0847: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: Tnap_0707: Acetyl xylan esterase (EC 3.1.1.41) |
Gene: Tlet_0356: Acetyl xylan esterase (EC 3.1.1.41) |
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Acetyl xylan esterase (EC 3.1.1.41) |
| CRON 6. | ||||||||||||
| xynB |
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Thermotoga maritima MSB8 Site: position = -103 score = 5.19291 sequence = TGTAAAAGATTATTTCAAA Gene: TM0070: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
Gene: TRQ2_0877: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
Gene: CTN_0623: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Thermotoga petrophila RKU-1 Site: position = -103 score = 5.19291 sequence = TGTAAAAGATTATTTCAAA Gene: Tpet_0854: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Thermotoga naphthophila RKU-10 Site: position = -103 score = 5.19291 sequence = TGTAAAAGATTATTTCAAA Gene: Tnap_0700: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |