Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Thermotoga maritima MSB8

Properties
Regulator type: Transcription factor
TF locus tag: TM0065
Regulator family: IclR
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Thermotogales
Statistics of regulated genes:
- Genes 19
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -199
Score: 6
Sequence: TGTGAAAGGAACTTTCAAA
Locus tag: TM0060
Name: xtpF
Funciton: Xylan oligosaccharide ABC transporter, permease component 1
Locus tag: TM0059
Name: xtpG
Funciton: Xylan oligosaccharide ABC transporter, permease component 2
Locus tag: TM0058
Name: xtpK
Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
Locus tag: TM0057
Name: xtpL
Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
Locus tag: TM0056
Name: xtpE
Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component
Locus tag: TM0055
Name: aguA
Funciton: Alpha-glucuronidase (EC 3.2.1.139)
TM0060
xtpF
Xylan oligosaccharide ABC transporter, permease component 1
TM0059
xtpG
Xylan oligosaccharide ABC transporter, permease component 2
TM0058
xtpK
Xylan oligosaccharide ABC transporter, ATP-binding protein 1
TM0057
xtpL
Xylan oligosaccharide ABC transporter, ATP-binding protein 2
TM0056
xtpE
Xylan oligosaccharide ABC transporter, substrate-binding component
TM0055
aguA
Alpha-glucuronidase (EC 3.2.1.139)
Position: -88
Score: 5.9
Sequence: TTTGAAAATGGTTTTCTCA
Locus tag: TM0065
Name: kdgR
Funciton: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
TM0065
kdgR
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
Position: -32
Score: 5.9
Sequence: TGAGAAAACCATTTTCAAA
Locus tag: TM0064
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: TM0063
Name: null
Funciton: hypothetical protein
TM0064
uxaC
Uronate isomerase (EC 5.3.1.12)
TM0063
hypothetical protein
Position: -138
Score: 6
Sequence: TTTGAAAGTTCCTTTCACA
Locus tag: TM0061
Name: xynA1
Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Locus tag: TM0062
Name: cenC
Funciton: Carbohydrate-binding CenC domain protein
TM0061
xynA1
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
TM0062
cenC
Carbohydrate-binding CenC domain protein
Position: -135
Score: 5.2
Sequence: TTTGAAATAATCTTTTACA
Locus tag: TM0071
Name: xloE
Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein
Locus tag: TM0072
Name: xloF
Funciton: Xylose oligosaccharides ABC transporter, permease protein 1
Locus tag: TM0073
Name: xloG
Funciton: Xylose oligosaccharides ABC transporter, permease protein 2
Locus tag: TM0074
Name: xloK
Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
Locus tag: TM0075
Name: xloL
Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
Locus tag: TM0076
Name: xyl3
Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: TM0077
Name: axeA
Funciton: Acetyl xylan esterase (EC 3.1.1.41)
TM0071
xloE
Xylose oligosaccharides ABC transporter, sugar-binding protein
TM0072
xloF
Xylose oligosaccharides ABC transporter, permease protein 1
TM0073
xloG
Xylose oligosaccharides ABC transporter, permease protein 2
TM0074
xloK
Xylose oligosaccharides ABC transporter, ATP-binding protein 1
TM0075
xloL
Xylose oligosaccharides ABC transporter, ATP-binding protein 2
TM0076
xyl3
Beta-xylosidase (EC 3.2.1.37)
TM0077
axeA
Acetyl xylan esterase (EC 3.1.1.41)
Position: -103
Score: 5.2
Sequence: TGTAAAAGATTATTTCAAA
Locus tag: TM0070
Name: xynB
Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
TM0070
xynB
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
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