Regulon of KdgR in Thermotoga naphthophila RKU-10
| Regulator type: | Transcription factor |
| TF locus tag: | Tnap_0695 |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | 2-keto-3-deoxygluconate |
| Regulog: | KdgR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - KdgR
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Glucuronate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -198
Score: 6 Sequence: TGTGAAAGGAACTTTCAAA
Locus tag: Tnap_0690
Name: xtpF Funciton: Xylan oligosaccharide ABC transporter, permease component 1
Locus tag: Tnap_0689
Name: xtpG Funciton: Xylan oligosaccharide ABC transporter, permease component 2
Locus tag: Tnap_0688
Name: xtpK Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
Locus tag: Tnap_0687
Name: xtpL Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
Locus tag: Tnap_0686
Name: xtpE Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tnap_0685
Name: aguA Funciton: Alpha-glucuronidase (EC 3.2.1.139) |
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xtpF
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Xylan oligosaccharide ABC transporter, permease component 1
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xtpG
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Xylan oligosaccharide ABC transporter, permease component 2
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xtpK
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Xylan oligosaccharide ABC transporter, ATP-binding protein 1
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xtpL
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Xylan oligosaccharide ABC transporter, ATP-binding protein 2
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xtpE
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Xylan oligosaccharide ABC transporter, substrate-binding component
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aguA
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Alpha-glucuronidase (EC 3.2.1.139)
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Position: -32
Score: 5.9 Sequence: TGAGAAAACCATTTTCAAA
Locus tag: Tnap_0694
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: Tnap_0693
Name: null Funciton: hypothetical protein |
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uxaC
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Uronate isomerase (EC 5.3.1.12)
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hypothetical protein
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Position: -88
Score: 5.9 Sequence: TTTGAAAATGGTTTTCTCA
Locus tag: Tnap_0695
Name: kdgR Funciton: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family |
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kdgR
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Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
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Position: -138
Score: 6 Sequence: TTTGAAAGTTCCTTTCACA
Locus tag: Tnap_0691
Name: xynA1 Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Locus tag: Tnap_0692
Name: cenC Funciton: Carbohydrate-binding CenC domain protein |
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xynA1
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Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
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cenC
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Carbohydrate-binding CenC domain protein
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Position: -135
Score: 5.2 Sequence: TTTGAAATAATCTTTTACA
Locus tag: Tnap_0701
Name: xloE Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein
Locus tag: Tnap_0702
Name: xloF Funciton: Xylose oligosaccharides ABC transporter, permease protein 1
Locus tag: Tnap_0703
Name: xloG Funciton: Xylose oligosaccharides ABC transporter, permease protein 2
Locus tag: Tnap_0704
Name: xloK Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
Locus tag: Tnap_0705
Name: xloL Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
Locus tag: Tnap_0706
Name: xyl3 Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: Tnap_0707
Name: axeA Funciton: Acetyl xylan esterase (EC 3.1.1.41) |
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xloE
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Xylose oligosaccharides ABC transporter, sugar-binding protein
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xloF
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Xylose oligosaccharides ABC transporter, permease protein 1
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xloG
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Xylose oligosaccharides ABC transporter, permease protein 2
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xloK
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Xylose oligosaccharides ABC transporter, ATP-binding protein 1
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xloL
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Xylose oligosaccharides ABC transporter, ATP-binding protein 2
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xyl3
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Beta-xylosidase (EC 3.2.1.37)
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axeA
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Acetyl xylan esterase (EC 3.1.1.41)
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Position: -103
Score: 5.2 Sequence: TGTAAAAGATTATTTCAAA
Locus tag: Tnap_0700
Name: xynB Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) |
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xynB
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Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |