Regulon of KdgR in Thermotoga naphthophila RKU-10

Properties
Regulator type:	Transcription factor
TF locus tag:	Tnap_0695
Regulator family:	IclR
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:	2-keto-3-deoxygluconate
Regulog:	KdgR - Thermotogales
Statistics of regulated genes:
- Genes	19
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Thermotogales
By trascription factor - KdgR
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Glucuronate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -198 Score: 6 Sequence: TGTGAAAGGAACTTTCAAA Locus tag: Tnap_0690 Name: xtpF Funciton: Xylan oligosaccharide ABC transporter, permease component 1 Locus tag: Tnap_0689 Name: xtpG Funciton: Xylan oligosaccharide ABC transporter, permease component 2 Locus tag: Tnap_0688 Name: xtpK Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1 Locus tag: Tnap_0687 Name: xtpL Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2 Locus tag: Tnap_0686 Name: xtpE Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component Locus tag: Tnap_0685 Name: aguA Funciton: Alpha-glucuronidase (EC 3.2.1.139)
	Tnap_0690	xtpF	Xylan oligosaccharide ABC transporter, permease component 1
	Tnap_0689	xtpG	Xylan oligosaccharide ABC transporter, permease component 2
	Tnap_0688	xtpK	Xylan oligosaccharide ABC transporter, ATP-binding protein 1
	Tnap_0687	xtpL	Xylan oligosaccharide ABC transporter, ATP-binding protein 2
	Tnap_0686	xtpE	Xylan oligosaccharide ABC transporter, substrate-binding component
	Tnap_0685	aguA	Alpha-glucuronidase (EC 3.2.1.139)
Position: -32 Score: 5.9 Sequence: TGAGAAAACCATTTTCAAA Locus tag: Tnap_0694 Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12) Locus tag: Tnap_0693 Name: null Funciton: hypothetical protein
	Tnap_0694	uxaC	Uronate isomerase (EC 5.3.1.12)
	Tnap_0693		hypothetical protein
Position: -88 Score: 5.9 Sequence: TTTGAAAATGGTTTTCTCA Locus tag: Tnap_0695 Name: kdgR Funciton: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
	Tnap_0695	kdgR	Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
Position: -138 Score: 6 Sequence: TTTGAAAGTTCCTTTCACA Locus tag: Tnap_0691 Name: xynA1 Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) Locus tag: Tnap_0692 Name: cenC Funciton: Carbohydrate-binding CenC domain protein
	Tnap_0691	xynA1	Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
	Tnap_0692	cenC	Carbohydrate-binding CenC domain protein
Position: -135 Score: 5.2 Sequence: TTTGAAATAATCTTTTACA Locus tag: Tnap_0701 Name: xloE Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein Locus tag: Tnap_0702 Name: xloF Funciton: Xylose oligosaccharides ABC transporter, permease protein 1 Locus tag: Tnap_0703 Name: xloG Funciton: Xylose oligosaccharides ABC transporter, permease protein 2 Locus tag: Tnap_0704 Name: xloK Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1 Locus tag: Tnap_0705 Name: xloL Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2 Locus tag: Tnap_0706 Name: xyl3 Funciton: Beta-xylosidase (EC 3.2.1.37) Locus tag: Tnap_0707 Name: axeA Funciton: Acetyl xylan esterase (EC 3.1.1.41)
	Tnap_0701	xloE	Xylose oligosaccharides ABC transporter, sugar-binding protein
	Tnap_0702	xloF	Xylose oligosaccharides ABC transporter, permease protein 1
	Tnap_0703	xloG	Xylose oligosaccharides ABC transporter, permease protein 2
	Tnap_0704	xloK	Xylose oligosaccharides ABC transporter, ATP-binding protein 1
	Tnap_0705	xloL	Xylose oligosaccharides ABC transporter, ATP-binding protein 2
	Tnap_0706	xyl3	Beta-xylosidase (EC 3.2.1.37)
	Tnap_0707	axeA	Acetyl xylan esterase (EC 3.1.1.41)
Position: -103 Score: 5.2 Sequence: TGTAAAAGATTATTTCAAA Locus tag: Tnap_0700 Name: xynB Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
	Tnap_0700	xynB	Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of KdgR in Thermotoga naphthophila RKU-10

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --