Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Thermotoga petrophila RKU-1

Properties
Regulator type: Transcription factor
TF locus tag: Tpet_0859
Regulator family: IclR
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Thermotogales
Statistics of regulated genes:
- Genes 19
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -139
Score: 6
Sequence: TTTGAAAGTTCCTTTCACA
Locus tag: Tpet_0863
Name: xynA1
Funciton: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Locus tag: Tpet_0862
Name: cenC
Funciton: Carbohydrate-binding CenC domain protein
xynA1
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
cenC
Carbohydrate-binding CenC domain protein

Position: -32
Score: 5.9
Sequence: TGAGAAAACCATTTTCAAA
Locus tag: Tpet_0860
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: Tpet_0861
Name: null
Funciton: hypothetical protein
uxaC
Uronate isomerase (EC 5.3.1.12)
hypothetical protein

Position: -199
Score: 6
Sequence: TGTGAAAGGAACTTTCAAA
Locus tag: Tpet_0864
Name: xtpF
Funciton: Xylan oligosaccharide ABC transporter, permease component 1
Locus tag: Tpet_0865
Name: xtpG
Funciton: Xylan oligosaccharide ABC transporter, permease component 2
Locus tag: Tpet_0866
Name: xtpK
Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
Locus tag: Tpet_0867
Name: xtpL
Funciton: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
Locus tag: Tpet_0868
Name: xtpE
Funciton: Xylan oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tpet_0869
Name: aguA
Funciton: Alpha-glucuronidase (EC 3.2.1.139)
xtpF
Xylan oligosaccharide ABC transporter, permease component 1
xtpG
Xylan oligosaccharide ABC transporter, permease component 2
xtpK
Xylan oligosaccharide ABC transporter, ATP-binding protein 1
xtpL
Xylan oligosaccharide ABC transporter, ATP-binding protein 2
xtpE
Xylan oligosaccharide ABC transporter, substrate-binding component
aguA
Alpha-glucuronidase (EC 3.2.1.139)

Position: -88
Score: 5.9
Sequence: TTTGAAAATGGTTTTCTCA
Locus tag: Tpet_0859
Name: kdgR
Funciton: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
kdgR
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family

Position: -136
Score: 5.2
Sequence: TTTGAAATAATCTTTTACA
Locus tag: Tpet_0853
Name: xloE
Funciton: Xylose oligosaccharides ABC transporter, sugar-binding protein
Locus tag: Tpet_0852
Name: xloF
Funciton: Xylose oligosaccharides ABC transporter, permease protein 1
Locus tag: Tpet_0851
Name: xloG
Funciton: Xylose oligosaccharides ABC transporter, permease protein 2
Locus tag: Tpet_0850
Name: xloK
Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
Locus tag: Tpet_0849
Name: xloL
Funciton: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
Locus tag: Tpet_0848
Name: xyl3
Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: Tpet_0847
Name: axeA
Funciton: Acetyl xylan esterase (EC 3.1.1.41)
xloE
Xylose oligosaccharides ABC transporter, sugar-binding protein
xloF
Xylose oligosaccharides ABC transporter, permease protein 1
xloG
Xylose oligosaccharides ABC transporter, permease protein 2
xloK
Xylose oligosaccharides ABC transporter, ATP-binding protein 1
xloL
Xylose oligosaccharides ABC transporter, ATP-binding protein 2
xyl3
Beta-xylosidase (EC 3.2.1.37)
axeA
Acetyl xylan esterase (EC 3.1.1.41)

Position: -103
Score: 5.2
Sequence: TGTAAAAGATTATTTCAAA
Locus tag: Tpet_0854
Name: xynB
Funciton: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
xynB
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
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