Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RhaR regulog to Thermotoga petrophila RKU-1

Reference regulog properties
Source regulog: RhaR - Thermotogales
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Rhamnose utilization; Rhamnose oligosaccharides utilization
Effector: Rhamnose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga petrophila RKU-1
Orthologous TF(s) Tpet_1675
Regulated genes 4
Built upon 13 sites [see more]
Predicted regulatory interactions in Thermotoga petrophila RKU-1
Locus tag Position Score Sequence
Position: -56
Score: 6.7
Sequence: TTGTGATTAATTTATGATAA
Locus tag: Tpet_1674
Tpet_1674 -56 6.7 TTGTGATTAATTTATGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaM2
Ortholog function: L-rhamnose mutarotase, alternative
Thermotoga maritima MSB8 TM1070 -56 6.7 TTGTGATTAATTTATGATAA
Thermotoga neapolitana DSM 4359 CTN_1499 -57 6.7 TTGTGATTAATTTATGATAA
Thermotoga petrophila RKU-1 Tpet_1674 -56 6.7 TTGTGATTAATTTATGATAA
Thermotoga naphthophila RKU-10 Tnap_1697 -57 6.7 TTGTGATTAATTTATGATAA
Position: -29
Score: 4.4
Sequence: TTATCATAAATTAATCACAA
Locus tag: Tpet_1675
Tpet_1675 -29 4.4 TTATCATAAATTAATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaR
Ortholog function: Predicted regulator of rhamnose utilization, DeoR family
Thermotoga maritima MSB8 TM1069 -71 4.4 TTATCATAAATTAATCACAA
Thermotoga neapolitana DSM 4359 CTN_1500 -72 4.4 TTATCATAAATTAATCACAA
Thermotoga petrophila RKU-1 Tpet_1675 -29 4.4 TTATCATAAATTAATCACAA
Thermotoga naphthophila RKU-10 Tnap_1698 -72 4.4 TTATCATAAATTAATCACAA
Position: -78
Score: 5.7
Sequence: AGTTGATATCATATTGATAA
Locus tag: Tpet_1677
Tpet_1677 -78 5.7 AGTTGATATCATATTGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rtpE
Ortholog function: Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component
Thermotoga neapolitana DSM 4359 CTN_1502 -54 5.6 TATTGATACTATATTGATAG
Thermotoga petrophila RKU-1 Tpet_1677 -78 5.7 AGTTGATATCATATTGATAA
-47 5.3 TTATGATAAATTTATGATCG
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