Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of UxaR regulog to Thermotoga maritima MSB8

Reference regulog properties
Source regulog: UxaR - Thermotogales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization; Pectin utilization
Effector:
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga maritima MSB8
Orthologous TF(s) TM0439
Regulated genes 4
Built upon 18 sites [see more]
Predicted regulatory interactions in Thermotoga maritima MSB8
Locus tag Position Score Sequence
Position: -23
Score: 6
Sequence: TTAAATATCACATATCA
Locus tag: TM0066
TM0066 -23 6 TTAAATATCACATATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgA
Ortholog function: 2-dehydro-3-deoxyphosphogluconate aldolase
Thermotoga maritima MSB8 TM0066 -23 6 TTAAATATCACATATCA
Thermotoga sp. RQ2 TRQ2_0881 -29 6.2 TTAAACATCACATATCA
Thermotoga neapolitana DSM 4359 CTN_0627 -384 6.2 TTAAACATCAAATATCA
Thermotoga petrophila RKU-1 Tpet_0858 -29 6.2 TTAAACATCACATATCA
Thermotoga naphthophila RKU-10 Tnap_0696 -29 6.2 TTAAACATCACATATCA
Position: -50
Score: 5.4
Sequence: TGAAGTATCAGACATCA
Locus tag: TM0432
TM0432 -50 5.4 TGAAGTATCAGACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aguE
Ortholog function: Alpha-1,4-digalacturonate ABC transporter, substrate binding protein
Thermotoga maritima MSB8 TM0432 -50 5.4 TGAAGTATCAGACATCA
Thermotoga sp. RQ2 TRQ2_0512 -50 5.4 TGAAGTATCAGACATCA
Position: -29
Score: 6.4
Sequence: TGAAACATCAGATATCT
Locus tag: TM0433
TM0433 -29 6.4 TGAAACATCAGATATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelA
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Thermotoga maritima MSB8 TM0433 -29 6.4 TGAAACATCAGATATCT
Thermotoga sp. RQ2 TRQ2_0511 -35 6.4 TGAAACATCAGATATCT
Position: -25
Score: 6.4
Sequence: TGAAACATCAAACATCT
Locus tag: TM0436
TM0436 -25 6.4 TGAAACATCAAACATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aldH
Ortholog function: alcohol dehydrogenase, zinc-containing
Thermotoga maritima MSB8 TM0436 -25 6.4 TGAAACATCAAACATCT
Thermotoga sp. RQ2 TRQ2_0499 -29 6.4 TGAAACATCAAACATCT
Thermotoga petrophila RKU-1 Tpet_0484 -28 6.4 TGAAACATCAAACATCT
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