Regulog CelR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Cellobiose utilization |
| Effector: | Cellobiose |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - LacI
- By effector - Cellobiose
- By pathway - Cellobiose utilization
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 21 | 7 |
| Thermotoga sp. RQ2 | 22 | 7 |
| Thermotoga neapolitana DSM 4359 | 13 | 5 |
| Thermotoga petrophila RKU-1 | 13 | 5 |
| Thermotoga naphthophila RKU-10 | 13 | 5 |
| Thermotoga lettingae TMO | 9 | 1 |
| Thermosipho africanus TCF52B | ||
| Thermosipho melanesiensis BI429 | ||
| Fervidobacterium nodosum Rt17-B1 | 8 | 1 |
| Petrotoga mobilis SJ95 | ||
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| cbpA |
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Thermotoga maritima MSB8 Site: position = -59 score = 5.85018 sequence = ATGAAAACATTTTCAG Gene: TM1848: Cellobiose phosphorylase (EC 2.4.1.-) |
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Thermotoga sp. RQ2 Site: position = -59 score = 5.85018 sequence = ATGAAAACATTTTCAG Gene: TRQ2_0968: Cellobiose phosphorylase (EC 2.4.1.-) |
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Thermotoga neapolitana DSM 4359 Site: position = -57 score = 5.97578 sequence = ATGAAAACATTTTCAC Gene: CTN_0783: Cellobiose phosphorylase (EC 2.4.1.-) |
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Thermotoga petrophila RKU-1 Site: position = -59 score = 5.85018 sequence = ATGAAAACATTTTCAG Gene: Tpet_0951: Cellobiose phosphorylase (EC 2.4.1.-) |
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Thermotoga naphthophila RKU-10 Site: position = -59 score = 5.85018 sequence = ATGAAAACATTTTCAG Gene: Tnap_0603: Cellobiose phosphorylase (EC 2.4.1.-) |
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Cellobiose phosphorylase (EC 2.4.1.-) |
| bglA |
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Gene: TRQ2_0969: Beta-glucosidase A (EC 3.2.1.21) |
Gene: CTN_0782: Beta-glucosidase A (EC 3.2.1.21) |
Gene: Tpet_0952: Beta-glucosidase A (EC 3.2.1.21) |
Gene: Tnap_0602: Beta-glucosidase A (EC 3.2.1.21) |
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Gene: THA_1926: Beta-glucosidase A (EC 3.2.1.21) |
Gene: Tmel_1638: Beta-glucosidase A (EC 3.2.1.21) |
Gene: Fnod_1530: Beta-glucosidase A (EC 3.2.1.21) |
Gene: Pmob_0493: Beta-glucosidase A (EC 3.2.1.21) |
Gene: Kole_1034: Beta-glucosidase A (EC 3.2.1.21) |
Beta-glucosidase A (EC 3.2.1.21) |
| CRON 2. | ||||||||||||
| manC |
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Thermotoga lettingae TMO Site: position = -74 score = 6.15644 sequence = ATGAAAATGTTTTCAT Gene: Tlet_1437: Predicted mannobiose phosphorylase |
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Predicted mannobiose phosphorylase |
| celE |
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Thermotoga maritima MSB8 Site: position = -70 score = 5.74601 sequence = ATGTAAACATTTTCAC Gene: TM1223: Predicted cellobiose ABC transport system, sugar-binding protein |
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Thermotoga sp. RQ2 Site: position = -70 score = 5.74601 sequence = ATGTAAACATTTTCAC Gene: TRQ2_1595: Predicted cellobiose ABC transport system, sugar-binding protein |
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Thermotoga neapolitana DSM 4359 Site: position = -70 score = 5.74601 sequence = ATGTAAACATTTTCAC Gene: CTN_1348: Predicted cellobiose ABC transport system, sugar-binding protein |
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Thermotoga petrophila RKU-1 Site: position = -70 score = 5.74601 sequence = ATGTAAACATTTTCAC Gene: Tpet_1545: Predicted cellobiose ABC transport system, sugar-binding protein |
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Thermotoga naphthophila RKU-10 Site: position = -70 score = 5.74601 sequence = ATGTAAACATTTTCAC Gene: Tnap_1569: Predicted cellobiose ABC transport system, sugar-binding protein |
Gene: Tlet_1438: Predicted cellobiose ABC transport system, sugar-binding protein |
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Fervidobacterium nodosum Rt17-B1 Site: position = -70 score = 5.939 sequence = ATGTAAATATTTTCAT Gene: Fnod_1553: Predicted cellobiose ABC transport system, sugar-binding protein |
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Predicted cellobiose ABC transport system, sugar-binding protein |
| celF |
Gene: TM1222: Predicted cellobiose ABC transport system, permease protein 1 |
Gene: TRQ2_1596: Predicted cellobiose ABC transport system, permease protein 1 |
Gene: CTN_1349: Predicted cellobiose ABC transport system, permease protein 1 |
Gene: Tpet_1546: Predicted cellobiose ABC transport system, permease protein 1 |
Gene: Tnap_1570: Predicted cellobiose ABC transport system, permease protein 1 |
Gene: Tlet_1439: Predicted cellobiose ABC transport system, permease protein 1 |
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Gene: Fnod_1554: Predicted cellobiose ABC transport system, permease protein 1 |
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Predicted cellobiose ABC transport system, permease protein 1 |
| celG |
Gene: TM1221: Predicted cellobiose ABC transport system, permease protein 2 |
Gene: TRQ2_1597: Predicted cellobiose ABC transport system, permease protein 2 |
Gene: CTN_1350: Predicted cellobiose ABC transport system, permease protein 2 |
Gene: Tpet_1547: Predicted cellobiose ABC transport system, permease protein 2 |
Gene: Tnap_1571: Predicted cellobiose ABC transport system, permease protein 2 |
Gene: Tlet_1440: Predicted cellobiose ABC transport system, permease protein 2 |
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Gene: Fnod_1555: Predicted cellobiose ABC transport system, permease protein 2 |
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Predicted cellobiose ABC transport system, permease protein 2 |
| celK |
Gene: TM1220: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
Gene: TRQ2_1598: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
Gene: CTN_1351: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
Gene: Tpet_1548: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
Gene: Tnap_1572: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
Gene: Tlet_1441: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
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Gene: Fnod_1556: Predicted cellobiose ABC transport system, ATP-binding protein 1 |
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Predicted cellobiose ABC transport system, ATP-binding protein 1 |
| celL |
Gene: TM1219: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
Gene: TRQ2_1599: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
Gene: CTN_1352: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
Gene: Tpet_1549: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
Gene: Tnap_1573: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
Gene: Tlet_1442: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
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Gene: Fnod_1557: Predicted cellobiose ABC transport system, ATP-binding protein 2 |
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Predicted cellobiose ABC transport system, ATP-binding protein 2 |
| galA |
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Gene: Tlet_1443: alpha-galactosidase |
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alpha-galactosidase |
| bglB |
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Gene: Tlet_1444: beta-galactosidase |
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Gene: Fnod_1558: beta-galactosidase |
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beta-galactosidase |
| celR |
Gene: TM1218: Predicted regulator of cellobiose and glucan utilization, LacI family |
Gene: TRQ2_1600: Predicted regulator of cellobiose and glucan utilization, LacI family |
Gene: CTN_1353: Predicted regulator of cellobiose and glucan utilization, LacI family |
Gene: Tpet_1550: Predicted regulator of cellobiose and glucan utilization, LacI family |
Gene: Tnap_1574: Predicted regulator of cellobiose and glucan utilization, LacI family |
Gene: Tlet_1445: Predicted regulator of cellobiose and glucan utilization, LacI family |
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Gene: Fnod_1559: Predicted regulator of cellobiose and glucan utilization, LacI family |
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Predicted regulator of cellobiose and glucan utilization, LacI family |
| celH |
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Gene: Fnod_1560: Endo-1,4-beta-glucanase |
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Endo-1,4-beta-glucanase |
| CRON 3. | ||||||||||||
| celQ |
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Thermotoga maritima MSB8 Site: position = -48 score = 5.61759 sequence = GTGAAAACAGTTTCAT Gene: TM0308: Putative alpha-glucosidase (EC 3.2.1.-) |
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Thermotoga sp. RQ2 Site: position = -48 score = 5.61759 sequence = GTGAAAACAGTTTCAT Gene: TRQ2_0623: Putative alpha-glucosidase (EC 3.2.1.-) |
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Thermotoga neapolitana DSM 4359 Site: position = 4 score = 6.15644 sequence = ATGAAAACATTTTCAT Gene: CTN_0380: Putative alpha-glucosidase (EC 3.2.1.-) |
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Thermotoga petrophila RKU-1 Site: position = -48 score = 5.61759 sequence = GTGAAAACAGTTTCAT Gene: Tpet_0609: Putative alpha-glucosidase (EC 3.2.1.-) |
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Thermotoga naphthophila RKU-10 Site: position = -48 score = 5.61759 sequence = GTGAAAACAGTTTCAT Gene: Tnap_0947: Putative alpha-glucosidase (EC 3.2.1.-) |
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Putative alpha-glucosidase (EC 3.2.1.-) |
| CRON 4. | ||||||||||||
| TM0312 |
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Thermotoga maritima MSB8 Site: position = -49 score = 5.85018 sequence = ATGAAAACATTTTCAG Gene: TM0312: Predicted dehydrogenase in CelR regulon, COG0673 |
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Thermotoga sp. RQ2 Site: position = -58 score = 5.81482 sequence = ATGAAAACATTTTCAA Gene: TRQ2_0619: Predicted dehydrogenase in CelR regulon, COG0673 |
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Thermotoga neapolitana DSM 4359 Site: position = -49 score = 5.81482 sequence = ATGAAAACATTTTCAA Gene: CTN_0375: Predicted dehydrogenase in CelR regulon, COG0673 |
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Thermotoga petrophila RKU-1 Site: position = -58 score = 5.81482 sequence = ATGAAAACATTTTCAA Gene: Tpet_0605: Predicted dehydrogenase in CelR regulon, COG0673 |
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Thermotoga naphthophila RKU-10 Site: position = -58 score = 5.81482 sequence = ATGAAAACATTTTCAA Gene: Tnap_0951: Predicted dehydrogenase in CelR regulon, COG0673 |
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Gene: THA_1849: Predicted dehydrogenase in CelR regulon, COG0673 |
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Predicted dehydrogenase in CelR regulon, COG0673 |
| TM0313 |
Gene: TM0313: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: TRQ2_0618: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: CTN_0374: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Tpet_0604: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Tnap_0952: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Tlet_1745: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: THA_383: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Tmel_0148: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Fnod_0809: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Pmob_0838: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Gene: Kole_1676: Predicted aldo/keto reductase in CelR regulon, COG4989 |
Predicted aldo/keto reductase in CelR regulon, COG4989 |
| CRON 5. | ||||||||||||
| gloE |
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Thermotoga maritima MSB8 Site: position = -74 score = 6.15644 sequence = ATGAAAATGTTTTCAT Gene: TM0300: Glucose oligosaccharide ABC transport system, sugar-binding protein |
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Thermotoga sp. RQ2 Site: position = -74 score = 6.15644 sequence = ATGAAAATGTTTTCAT Gene: TRQ2_0631: Glucose oligosaccharide ABC transport system, sugar-binding protein |
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Gene: Tpet_0485: Glucose oligosaccharide ABC transport system, sugar-binding protein |
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Glucose oligosaccharide ABC transport system, sugar-binding protein |
| gloF |
Gene: TM0301: Glucose oligosaccharide ABC transport system, permease protein 1 |
Gene: TRQ2_0630: Glucose oligosaccharide ABC transport system, permease protein 1 |
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Glucose oligosaccharide ABC transport system, permease protein 1 |
| gloG |
Gene: TM0302: Glucose oligosaccharide ABC transport system, permease protein 2 |
Gene: TRQ2_0629: Glucose oligosaccharide ABC transport system, permease protein 2 |
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Glucose oligosaccharide ABC transport system, permease protein 2 |
| gloK |
Gene: TM0303: Glucose oligosaccharide ABC transport system, ATP-binding protein 1 |
Gene: TRQ2_0628: Glucose oligosaccharide ABC transport system, ATP-binding protein 1 |
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Glucose oligosaccharide ABC transport system, ATP-binding protein 1 |
| gloL |
Gene: TM0304: Glucose oligosaccharide ABC transport system, ATP-binding protein 2 |
Gene: TRQ2_0627: Glucose oligosaccharide ABC transport system, ATP-binding protein 2 |
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Glucose oligosaccharide ABC transport system, ATP-binding protein 2 |
| cel74 |
Gene: TM0305: extracellular endo-1,4-glucanase |
Gene: TRQ2_0626: extracellular endo-1,4-glucanase |
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extracellular endo-1,4-glucanase |
| fucA |
Gene: TM0306: Alpha-L-fucosidase (EC 3.2.1.51) |
Gene: TRQ2_0625: Alpha-L-fucosidase (EC 3.2.1.51) |
Gene: CTN_0382: Alpha-L-fucosidase (EC 3.2.1.51) |
Gene: Tpet_0611: Alpha-L-fucosidase (EC 3.2.1.51) |
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Alpha-L-fucosidase (EC 3.2.1.51) |
| fucI |
Gene: TM0307: L-fucose isomerase, putative |
Gene: TRQ2_0624: L-fucose isomerase, putative |
Gene: CTN_0381: L-fucose isomerase, putative |
Gene: Tpet_0610: L-fucose isomerase, putative |
Gene: Tnap_0946: L-fucose isomerase, putative |
Gene: Tlet_0019: L-fucose isomerase, putative |
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L-fucose isomerase, putative |
| CRON 6. | ||||||||||||
| gloR |
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Thermotoga maritima MSB8 Site: position = -179 score = 6.15644 sequence = ATGAAAACATTTTCAT Gene: TM0299: Predicted glucose oligosaccharide utilization regulator, LacI family |
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Thermotoga sp. RQ2 Site: position = -179 score = 6.15644 sequence = ATGAAAACATTTTCAT Gene: TRQ2_0632: Predicted glucose oligosaccharide utilization regulator, LacI family |
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Gene: Tnap_0935: Predicted glucose oligosaccharide utilization regulator, LacI family |
Gene: Tlet_0017: Predicted glucose oligosaccharide utilization regulator, LacI family |
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Gene: Pmob_1599: Predicted glucose oligosaccharide utilization regulator, LacI family |
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Predicted glucose oligosaccharide utilization regulator, LacI family |
| CRON 7. | ||||||||||||
| cel12A |
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Thermotoga maritima MSB8 Site: position = -41 score = 5.92667 sequence = ATGTAAACATTTTCAT Gene: TM1524: cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4) |
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Thermotoga sp. RQ2 Site: position = -41 score = 5.92667 sequence = ATGTAAACATTTTCAT Gene: TRQ2_1187: cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4) |
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Thermotoga neapolitana DSM 4359 Site: position = 60 score = 5.92667 sequence = ATGtAAAcATTTTCAT Gene: CTN_1106: cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4) |
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Thermotoga petrophila RKU-1 Site: position = 170 score = 5.92667 sequence = ATGtAAAcATTTTCAT Gene: Tpet_1268: cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4) |
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Thermotoga naphthophila RKU-10 Site: position = 119 score = 5.92667 sequence = ATGtAAAcATTTTCAT Gene: Tnap_1285: cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4) |
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cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4) |
| cel12B |
Gene: TM1525: extracellular endo-1,4-beta-glucanase (EC 3.2.1.4) |
Gene: TRQ2_1188: extracellular endo-1,4-beta-glucanase (EC 3.2.1.4) |
Gene: CTN_1107: extracellular endo-1,4-beta-glucanase (EC 3.2.1.4) |
Gene: Tpet_1267: extracellular endo-1,4-beta-glucanase (EC 3.2.1.4) |
Gene: Tnap_1284: extracellular endo-1,4-beta-glucanase (EC 3.2.1.4) |
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extracellular endo-1,4-beta-glucanase (EC 3.2.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |