Regulog Rex1 - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Genome | Genes | Operons |
|---|---|---|
| Fervidobacterium nodosum Rt17-B1 | 5 | 2 |
| Petrotoga mobilis SJ95 | ||
| Thermosipho africanus TCF52B | 7 | 1 |
| Thermosipho melanesiensis BI429 | 7 | 1 |
| Thermotoga lettingae TMO | 7 | 1 |
| Thermotoga maritima MSB8 | 8 | 1 |
| Thermotoga naphthophila RKU-10 | 2 | 1 |
| Thermotoga neapolitana DSM 4359 | 7 | 1 |
| Thermotoga petrophila RKU-1 | 7 | 1 |
| Thermotoga sp. RQ2 | 7 | 1 |
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| TM1420 |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -52 score = 5.99255 sequence = TCGTGAAATAATTAACGA Gene: Fnod_0319: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
|
*
Thermosipho africanus TCF52B Site: position = -49 score = 5.03286 sequence = TCGTGAAAATAATAACGT Gene: THA_782: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermosipho melanesiensis BI429 Site: position = -43 score = 5.1331 sequence = TCGTGAAAAATATAACGT Gene: Tmel_0495: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermotoga lettingae TMO Site: position = 32 score = 6.09555 sequence = TCGTGAAATAAATAACGA Gene: Tlet_0957: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermotoga maritima MSB8 Site: position = -95 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: TM1420: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermotoga naphthophila RKU-10 Site: position = -101 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: Tnap_1390: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermotoga neapolitana DSM 4359 Site: position = -101 score = 5.85098 sequence = TTGTGAATACAGTAACAA Gene: CTN_1072: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermotoga petrophila RKU-1 Site: position = -119 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: Tpet_1372: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
*
Thermotoga sp. RQ2 Site: position = -101 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: TRQ2_1314: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
|
Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein |
| TM1421 |
Gene: Fnod_0318: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
|
Gene: THA_783: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
Gene: Tmel_0494: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
Gene: Tlet_0956: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
2
Thermotoga maritima MSB8 Gene: TM1421: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein Gene: TM1422: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
Gene: Tnap_1389: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
Gene: CTN_1071: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
Gene: Tpet_1371: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
Gene: TRQ2_1315: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
|
Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein |
| TM1423 |
Gene: Fnod_0317: predicted protein serine/threonine phosphatase |
|
Gene: THA_784: predicted protein serine/threonine phosphatase |
Gene: Tmel_0493: predicted protein serine/threonine phosphatase |
Gene: Tlet_0955: predicted protein serine/threonine phosphatase |
Gene: TM1423: predicted protein serine/threonine phosphatase |
|
Gene: CTN_1070: predicted protein serine/threonine phosphatase |
Gene: Tpet_1370: predicted protein serine/threonine phosphatase |
Gene: TRQ2_1316: predicted protein serine/threonine phosphatase |
|
predicted protein serine/threonine phosphatase |
| hydC |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -125 score = 5.77582 sequence = TTGTGAAAAAAATAACGT Gene: Fnod_0227: Fe-hydrogenase, gamma subunit, FeS cluster containing |
|
Gene: THA_785: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: Tmel_0492: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: Tlet_0954: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: TM1424: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: Tnap_1387: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: CTN_1069: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: Tpet_1369: Fe-hydrogenase, gamma subunit, FeS cluster containing |
Gene: TRQ2_1317: Fe-hydrogenase, gamma subunit, FeS cluster containing |
|
Fe-hydrogenase, gamma subunit, FeS cluster containing |
| hydB |
Gene: Fnod_0226: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
|
Gene: THA_786: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: Tmel_0491: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: Tlet_0953: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: TM1425: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: Tnap_1386: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: CTN_1068: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: Tpet_1368: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
Gene: TRQ2_1318: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
|
Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity |
| hydA |
Gene: Fnod_0225: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
|
Gene: THA_787: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: Tmel_0490: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: Tlet_0952: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: TM1426: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: Tnap_1385: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: CTN_1067: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: Tpet_1367: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
Gene: TRQ2_1319: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
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Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity |
| rex1 |
Gene: Fnod_0224: Redox sensitive transcriptional regulator paralog, Rex family |
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Gene: THA_788: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: Tmel_0489: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: Tlet_0951: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: TM1427: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: Tnap_1384: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: CTN_1066: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: Tpet_1366: Redox sensitive transcriptional regulator paralog, Rex family |
Gene: TRQ2_1320: Redox sensitive transcriptional regulator paralog, Rex family |
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Redox sensitive transcriptional regulator paralog, Rex family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |