Regulog Rex1 - Thermotogales

Properties
Regulator type:	Transcription factor
Regulator family:	Rex
Regulation mode:	repressor
Biological process:	Energy metabolism
Effector:	NADH
Phylum:	Thermotogae
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Thermotogales
By trascription factor - Rex
By TF family - Rex
By effector - NADH
By pathway - Energy metabolism

Statistics of regulated genes
Genome	Genes	Operons
Fervidobacterium nodosum Rt17-B1	5	2
Petrotoga mobilis SJ95
Thermosipho africanus TCF52B	7	1
Thermosipho melanesiensis BI429	7	1
Thermotoga lettingae TMO	7	1
Thermotoga maritima MSB8	8	1
Thermotoga naphthophila RKU-10	2	1
Thermotoga neapolitana DSM 4359	7	1
Thermotoga petrophila RKU-1	7	1
Thermotoga sp. RQ2	7	1
Thermotogales bacterium TBF 19.5.1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
TM1420	* Fervidobacterium nodosum Rt17-B1 Site: position = -52 score = 5.99255 sequence = TCGTGAAATAATTAACGA Gene: Fnod_0319: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	Petrotoga mobilis SJ95	* Thermosipho africanus TCF52B Site: position = -49 score = 5.03286 sequence = TCGTGAAAATAATAACGT Gene: THA_782: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermosipho melanesiensis BI429 Site: position = -43 score = 5.1331 sequence = TCGTGAAAAATATAACGT Gene: Tmel_0495: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermotoga lettingae TMO Site: position = 32 score = 6.09555 sequence = TCGTGAAATAAATAACGA Gene: Tlet_0957: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermotoga maritima MSB8 Site: position = -95 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: TM1420: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermotoga naphthophila RKU-10 Site: position = -101 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: Tnap_1390: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermotoga neapolitana DSM 4359 Site: position = -101 score = 5.85098 sequence = TTGTGAATACAGTAACAA Gene: CTN_1072: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermotoga petrophila RKU-1 Site: position = -119 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: Tpet_1372: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	* Thermotoga sp. RQ2 Site: position = -101 score = 6.57891 sequence = TTGTGAAGTAGGTAACAA Gene: TRQ2_1314: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein	Thermotogales bacterium TBF 19.5.1	Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
TM1421	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0318: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_783: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermosipho melanesiensis BI429 Gene: Tmel_0494: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermotoga lettingae TMO Gene: Tlet_0956: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	2 Thermotoga maritima MSB8 Gene: TM1421: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein Gene: TM1422: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermotoga naphthophila RKU-10 Gene: Tnap_1389: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermotoga neapolitana DSM 4359 Gene: CTN_1071: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermotoga petrophila RKU-1 Gene: Tpet_1371: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermotoga sp. RQ2 Gene: TRQ2_1315: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein	Thermotogales bacterium TBF 19.5.1	Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
TM1423	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0317: predicted protein serine/threonine phosphatase	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_784: predicted protein serine/threonine phosphatase	Thermosipho melanesiensis BI429 Gene: Tmel_0493: predicted protein serine/threonine phosphatase	Thermotoga lettingae TMO Gene: Tlet_0955: predicted protein serine/threonine phosphatase	Thermotoga maritima MSB8 Gene: TM1423: predicted protein serine/threonine phosphatase	Thermotoga naphthophila RKU-10	Thermotoga neapolitana DSM 4359 Gene: CTN_1070: predicted protein serine/threonine phosphatase	Thermotoga petrophila RKU-1 Gene: Tpet_1370: predicted protein serine/threonine phosphatase	Thermotoga sp. RQ2 Gene: TRQ2_1316: predicted protein serine/threonine phosphatase	Thermotogales bacterium TBF 19.5.1	predicted protein serine/threonine phosphatase
hydC	* Fervidobacterium nodosum Rt17-B1 Site: position = -125 score = 5.77582 sequence = TTGTGAAAAAAATAACGT Gene: Fnod_0227: Fe-hydrogenase, gamma subunit, FeS cluster containing	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_785: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermosipho melanesiensis BI429 Gene: Tmel_0492: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotoga lettingae TMO Gene: Tlet_0954: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotoga maritima MSB8 Gene: TM1424: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotoga naphthophila RKU-10 Gene: Tnap_1387: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotoga neapolitana DSM 4359 Gene: CTN_1069: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotoga petrophila RKU-1 Gene: Tpet_1369: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotoga sp. RQ2 Gene: TRQ2_1317: Fe-hydrogenase, gamma subunit, FeS cluster containing	Thermotogales bacterium TBF 19.5.1	Fe-hydrogenase, gamma subunit, FeS cluster containing
hydB	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0226: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_786: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermosipho melanesiensis BI429 Gene: Tmel_0491: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotoga lettingae TMO Gene: Tlet_0953: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotoga maritima MSB8 Gene: TM1425: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotoga naphthophila RKU-10 Gene: Tnap_1386: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotoga neapolitana DSM 4359 Gene: CTN_1068: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotoga petrophila RKU-1 Gene: Tpet_1368: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotoga sp. RQ2 Gene: TRQ2_1318: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity	Thermotogales bacterium TBF 19.5.1	Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
hydA	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0225: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_787: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermosipho melanesiensis BI429 Gene: Tmel_0490: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotoga lettingae TMO Gene: Tlet_0952: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotoga maritima MSB8 Gene: TM1426: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotoga naphthophila RKU-10 Gene: Tnap_1385: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotoga neapolitana DSM 4359 Gene: CTN_1067: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotoga petrophila RKU-1 Gene: Tpet_1367: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotoga sp. RQ2 Gene: TRQ2_1319: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity	Thermotogales bacterium TBF 19.5.1	Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
rex1	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0224: Redox sensitive transcriptional regulator paralog, Rex family	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_788: Redox sensitive transcriptional regulator paralog, Rex family	Thermosipho melanesiensis BI429 Gene: Tmel_0489: Redox sensitive transcriptional regulator paralog, Rex family	Thermotoga lettingae TMO Gene: Tlet_0951: Redox sensitive transcriptional regulator paralog, Rex family	Thermotoga maritima MSB8 Gene: TM1427: Redox sensitive transcriptional regulator paralog, Rex family	Thermotoga naphthophila RKU-10 Gene: Tnap_1384: Redox sensitive transcriptional regulator paralog, Rex family	Thermotoga neapolitana DSM 4359 Gene: CTN_1066: Redox sensitive transcriptional regulator paralog, Rex family	Thermotoga petrophila RKU-1 Gene: Tpet_1366: Redox sensitive transcriptional regulator paralog, Rex family	Thermotoga sp. RQ2 Gene: TRQ2_1320: Redox sensitive transcriptional regulator paralog, Rex family	Thermotogales bacterium TBF 19.5.1	Redox sensitive transcriptional regulator paralog, Rex family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Rex1 - Thermotogales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --