Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Thermosipho melanesiensis BI429

Reference regulog properties
Source regulog: Rex - Thermotogales
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Thermotogae
Propagated regulon:
Target genome Thermosipho melanesiensis BI429
Orthologous TF(s) Tmel_1209
Regulated genes 8
Built upon 114 sites [see more]
Predicted regulatory interactions in Thermosipho melanesiensis BI429
Locus tag Position Score Sequence
Position: -29
Score: 5.1
Sequence: TTGTGAAAATATTCACAG
Locus tag: Tmel_0139
Tmel_0139 -29 5.1 TTGTGAAAATATTCACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhA
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Thermosipho africanus TCF52B THA_374 -95 5.3 TcGTGAAAAaaTTaACgA
-29 5.1 TTGTGAAAATATTCACAG
Thermosipho melanesiensis BI429 Tmel_0139 -95 4.7 ccGTGAAAAaaaTaACgA
-29 5.1 TTGTGAAAATATTCACAG
Fervidobacterium nodosum Rt17-B1 Fnod_1174 -78 5 AAGTGATTTTTTTCACAA
Thermotogales bacterium TBF 19.5.1 Kole_0742 -111 4.8 cTGTGAAAAaaTTCACAt
-33 5.2 AAGTGAAAAAATTCACAA
Position: -31
Score: 5.2
Sequence: TAGTTAAAAAAATCACAA
Locus tag: Tmel_0141
Tmel_0141 -31 5.2 TAGTTAAAAAAATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE2
Ortholog function: NADH oxidase (EC 1.6.99.3)
Thermosipho africanus TCF52B THA_982 -38 4.8 AAGTTAAATTATTCTCAA
Thermosipho melanesiensis BI429 Tmel_0141 -31 5.2 TAGTTAAAAAAATCACAA
Fervidobacterium nodosum Rt17-B1 Fnod_0587 -65 4.5 aaGTGAAAAaaaTaACtt
Position: -43
Score: 5
Sequence: TCGTGAAAAATATAACGT
Locus tag: Tmel_0495
Tmel_0495 -43 5 TCGTGAAAAATATAACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM1420
Ortholog function: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Thermotoga maritima MSB8 TM1420 -45 5 TaGTGAAAAaTaTaACgt
Thermotoga sp. RQ2 TRQ2_1314 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga neapolitana DSM 4359 CTN_1072 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga petrophila RKU-1 Tpet_1372 -69 5 TaGTGAAAAaTaTaACgt
Thermotoga naphthophila RKU-10 Tnap_1390 -51 5 TaGTGAAAAaTaTaACgt
Thermotoga lettingae TMO Tlet_0957 32 5.2 TcGTGAAAtaaaTaACgA
46 4.7 acGatAAAAaTaTCACgA
Thermosipho melanesiensis BI429 Tmel_0495 -43 5 TcGTGAAAAaTaTaACgt
-29 4.9 acGTtAtttaTTTCACgA
Position: -69
Score: 4.5
Sequence: AAGTGAATTTTTTTACTT
Locus tag: Tmel_1172
Tmel_1172 -69 4.5 AAGTGAATTTTTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycA
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0012 -27 4.3 aTGTGAAAAaaaTatCAg
-2 5 TTGTGAAAAaaTTCcCgA
Thermotoga sp. RQ2 TRQ2_0933 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga neapolitana DSM 4359 CTN_0686 -61 4.3 ATGTGAAAAAAATATCAG
-36 5.2 TTGTGAAAAAATTCTCGA
Thermotoga petrophila RKU-1 Tpet_0911 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga naphthophila RKU-10 Tnap_0643 -69 4.3 ATGTGAAAAAAATATCAG
-44 5 TTGTGAAAAAATTCCCGA
Thermotoga lettingae TMO Tlet_1522 -30 4.8 TTGTGAATTTATTAACAG
Thermosipho africanus TCF52B THA_782 -49 4.9 TcGTGAAAATaaTaACgt
-35 5 acGTtAtAtTTTTCACgA
Thermosipho africanus TCF52B THA_1559 -65 4.6 aaGTGAAAtTTTTtACtt
12 4.2 TTGTGAAAAacaTgtCgA
Thermosipho melanesiensis BI429 Tmel_1172 -68 4.5 aaGTGAAttTTTTtACtt
9 4.2 TTGTGAAAAacaTgtCgA
Fervidobacterium nodosum Rt17-B1 Fnod_0995 -38 4.8 ATGTTATAATAATCACGA
Petrotoga mobilis SJ95 Pmob_0726 -133 5.3 ATGTGAATATTTTCACAA
Thermotogales bacterium TBF 19.5.1 Kole_0180 -71 4.6 aaGTGAAAtaaaTaACAt
Position: -59
Score: 4.9
Sequence: TTGTGAAAAATATATCAT
Locus tag: Tmel_1229
Tmel_1229 -59 4.9 TTGTGAAAAATATATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Thermotoga maritima MSB8 TM0379 -32 5 TCGTGAAAAATTTCTCTT
Thermotoga sp. RQ2 TRQ2_0544 -32 5 TCGTGAAAAATTTCTCTT
Thermotoga neapolitana DSM 4359 CTN_0317 -34 4.6 TTGTGAAATCTTTCTCTT
Thermotoga petrophila RKU-1 Tpet_0530 -32 4.8 TCGTGAAAAAATTCTCTT
Thermotoga naphthophila RKU-10 Tnap_0182 -32 4.8 TCGTGAAAAAATTCTCTT
Thermosipho melanesiensis BI429 Tmel_1229 -59 4.9 TTGTGAAAAATATATCAT
Position: -45
Score: 5.2
Sequence: TAGTAAAATTTTTCACGA
Locus tag: Tmel_1266
Tmel_1266 -45 5.2 TAGTAAAATTTTTCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gap
Ortholog function: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Thermotoga maritima MSB8 TM0688 -104 5.1 TaGTtAtttTTTTCACgA
Thermotoga neapolitana DSM 4359 CTN_1898 -103 5.1 TAGTTATTTTTTTCACGA
Thermotoga petrophila RKU-1 Tpet_0243 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga naphthophila RKU-10 Tnap_0484 -104 5.1 TAGTTATTTTTTTCACGA
Thermotoga lettingae TMO Tlet_0998 -29 4 cTGTtAtAATTTaatCAA
Thermosipho africanus TCF52B THA_1607 -44 5.2 TaGTaAAAtTTTTCACgA
Thermosipho melanesiensis BI429 Tmel_1266 -45 5.2 TaGTaAAAtTTTTCACgA
Fervidobacterium nodosum Rt17-B1 Fnod_0740 -77 4.7 TTGTacAAtTTTTCACgA
Petrotoga mobilis SJ95 Pmob_1445 -43 4.6 aaGaGAAAAaaaTaACAA
Thermotogales bacterium TBF 19.5.1 Kole_2020 -90 5.4 TaGTtAAtAaTTTCACAA
Position: -109
Score: 4.7
Sequence: TTGTGATATAATTTACTT
Locus tag: Tmel_1601
Tmel_1601 -109 4.7 TTGTGATATAATTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hycD
Ortholog function: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Thermotoga maritima MSB8 TM0201 24 5.3 TTGAGAAATTTATCACAA
Thermotoga sp. RQ2 TRQ2_0747 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga neapolitana DSM 4359 CTN_0485 0 5.1 TTGAGAATTTTATCACAA
Thermotoga petrophila RKU-1 Tpet_0723 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga naphthophila RKU-10 Tnap_0831 -54 5.3 TTGAGAAATTTATCACAA
Thermotoga lettingae TMO Tlet_1350 -42 4.7 ATGTGAATACTTTAACAA
Thermosipho africanus TCF52B THA_1808 -106 4.7 TTGTGAtAtaaTTtACtt
Thermosipho melanesiensis BI429 Tmel_1601 -108 4.7 TTGTGAtAtaaTTtACtt
Thermotogales bacterium TBF 19.5.1 Kole_0172 -57 4.7 TTGATAGAAAATTCACAA
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