Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CelR regulog to Thermotoga sp. RQ2

Reference regulog properties
Source regulog: CelR - Thermotogales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Cellobiose utilization
Effector: Cellobiose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga sp. RQ2
Orthologous TF(s) TRQ2_1600
Regulated genes 7
Built upon 31 sites [see more]
Predicted regulatory interactions in Thermotoga sp. RQ2
Locus tag Position Score Sequence
Position: -58
Score: 5.8
Sequence: ATGAAAACATTTTCAA
Locus tag: TRQ2_0619
TRQ2_0619 -58 5.8 ATGAAAACATTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: TM0312
Ortholog function: Predicted dehydrogenase in CelR regulon, COG0673
Thermotoga maritima MSB8 TM0312 -49 5.9 ATGAAAACATTTTCAG
Thermotoga sp. RQ2 TRQ2_0619 -58 5.8 ATGAAAACATTTTCAA
Thermotoga neapolitana DSM 4359 CTN_0375 -49 5.8 ATGAAAACATTTTCAA
Thermotoga petrophila RKU-1 Tpet_0605 -58 5.8 ATGAAAACATTTTCAA
Thermotoga naphthophila RKU-10 Tnap_0951 -58 5.8 ATGAAAACATTTTCAA
Position: -48
Score: 5.6
Sequence: GTGAAAACAGTTTCAT
Locus tag: TRQ2_0623
TRQ2_0623 -48 5.6 GTGAAAACAGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: celQ
Ortholog function: Putative alpha-glucosidase (EC 3.2.1.-)
Thermotoga maritima MSB8 TM0308 -48 5.6 GTGAAAACAGTTTCAT
Thermotoga sp. RQ2 TRQ2_0623 -48 5.6 GTGAAAACAGTTTCAT
Thermotoga neapolitana DSM 4359 CTN_0380 4 6.2 ATGAAAACATTTTCAT
Thermotoga petrophila RKU-1 Tpet_0609 -48 5.6 GTGAAAACAGTTTCAT
Thermotoga naphthophila RKU-10 Tnap_0947 -48 5.6 GTGAAAACAGTTTCAT
Position: -74
Score: 6.2
Sequence: ATGAAAATGTTTTCAT
Locus tag: TRQ2_0631
TRQ2_0631 -74 6.2 ATGAAAATGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloE
Ortholog function: Glucose oligosaccharide ABC transport system, sugar-binding protein
Thermotoga maritima MSB8 TM0300 -74 6.2 ATGAAAATGTTTTCAT
Thermotoga sp. RQ2 TRQ2_0631 -74 6.2 ATGAAAATGTTTTCAT
Position: -179
Score: 6.2
Sequence: ATGAAAACATTTTCAT
Locus tag: TRQ2_0632
TRQ2_0632 -179 6.2 ATGAAAACATTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloR
Ortholog function: Predicted glucose oligosaccharide utilization regulator, LacI family
Thermotoga maritima MSB8 TM0299 -179 6.2 ATGAAAACATTTTCAT
Thermotoga sp. RQ2 TRQ2_0632 -179 6.2 ATGAAAACATTTTCAT
Position: -59
Score: 5.9
Sequence: ATGAAAACATTTTCAG
Locus tag: TRQ2_0968
TRQ2_0968 -59 5.9 ATGAAAACATTTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cbpA
Ortholog function: Cellobiose phosphorylase (EC 2.4.1.-)
Thermotoga maritima MSB8 TM1848 -59 5.9 ATGAAAACATTTTCAG
Thermotoga sp. RQ2 TRQ2_0968 -59 5.9 ATGAAAACATTTTCAG
Thermotoga neapolitana DSM 4359 CTN_0783 -57 6 ATGAAAACATTTTCAC
Thermotoga petrophila RKU-1 Tpet_0951 -59 5.9 ATGAAAACATTTTCAG
Thermotoga naphthophila RKU-10 Tnap_0603 -59 5.9 ATGAAAACATTTTCAG
Position: -41
Score: 5.9
Sequence: ATGTAAACATTTTCAT
Locus tag: TRQ2_1187
TRQ2_1187 -41 5.9 ATGTAAACATTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cel12A
Ortholog function: cytoplasmic endo-1,4-beta-glucanase (EC 3.2.1.4)
Thermotoga maritima MSB8 TM1524 -41 5.9 ATGTAAACATTTTCAT
Thermotoga sp. RQ2 TRQ2_1187 -41 5.9 ATGTAAACATTTTCAT
Thermotoga neapolitana DSM 4359 CTN_1106 60 5.9 ATGtAAAcATTTTCAT
Thermotoga petrophila RKU-1 Tpet_1268 170 5.9 ATGtAAAcATTTTCAT
Thermotoga naphthophila RKU-10 Tnap_1285 119 5.9 ATGtAAAcATTTTCAT
Position: -70
Score: 5.7
Sequence: ATGTAAACATTTTCAC
Locus tag: TRQ2_1595
TRQ2_1595 -70 5.7 ATGTAAACATTTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: celE
Ortholog function: Predicted cellobiose ABC transport system, sugar-binding protein
Thermotoga maritima MSB8 TM1223 -70 5.7 ATGTAAACATTTTCAC
Thermotoga sp. RQ2 TRQ2_1595 -70 5.7 ATGTAAACATTTTCAC
Thermotoga neapolitana DSM 4359 CTN_1348 -70 5.7 ATGTAAACATTTTCAC
Thermotoga petrophila RKU-1 Tpet_1545 -70 5.7 ATGTAAACATTTTCAC
Thermotoga naphthophila RKU-10 Tnap_1569 -70 5.7 ATGTAAACATTTTCAC
Thermotoga lettingae TMO Tlet_1438 -74 6.2 ATGAAAATGTTTTCAT
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