Propagation of KdgR regulog to Thermotoga maritima MSB8
| Source regulog: | KdgR - Thermotogales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Thermotogae |
| Propagated regulon: | |
| Target genome | Thermotoga maritima MSB8 |
| Orthologous TF(s) | TM0065 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -199
Score: 6 Sequence: TGTGAAAGGAACTTTCAAA
Locus tag: TM0060
|
||||
| TM0060 | -199 | 6 | TGTGAAAGGAACTTTCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xtpF | ||||
| Ortholog function: Xylan oligosaccharide ABC transporter, permease component 1 | ||||
| Thermotoga maritima MSB8 | TM0060 | -199 | 6 | TGTGAAAGGAACTTTCAAA |
| Thermotoga sp. RQ2 | TRQ2_0886 | -199 | 6 | TGTGAAAGGAACTTTCAAA |
| Thermotoga neapolitana DSM 4359 | CTN_0634 | -191 | 5.9 | TGTGAAAAAGGCTTTCAAA |
| Thermotoga petrophila RKU-1 | Tpet_0864 | -199 | 6 | TGTGAAAGGAACTTTCAAA |
| Thermotoga naphthophila RKU-10 | Tnap_0690 | -198 | 6 | TGTGAAAGGAACTTTCAAA |
|
Position: -138
Score: 6 Sequence: TTTGAAAGTTCCTTTCACA
Locus tag: TM0061
|
||||
| TM0061 | -138 | 6 | TTTGAAAGTTCCTTTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xynA1 | ||||
| Ortholog function: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) | ||||
| Thermotoga maritima MSB8 | TM0061 | -138 | 6 | TTTGAAAGTTCCTTTCACA |
| Thermotoga sp. RQ2 | TRQ2_0885 | -138 | 6 | TTTGAAAGTTCCTTTCACA |
| Thermotoga neapolitana DSM 4359 | CTN_0632 | -91 | 5.9 | TTTGAAAGCCTTTTTCACA |
| Thermotoga petrophila RKU-1 | Tpet_0863 | -139 | 6 | TTTGAAAGTTCCTTTCACA |
| Thermotoga naphthophila RKU-10 | Tnap_0691 | -138 | 6 | TTTGAAAGTTCCTTTCACA |
|
Position: -32
Score: 5.9 Sequence: TGAGAAAACCATTTTCAAA
Locus tag: TM0064
|
||||
| TM0064 | -32 | 5.9 | TGAGAAAACCATTTTCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Thermotoga maritima MSB8 | TM0064 | -32 | 5.9 | TGAGAAAACCATTTTCAAA |
| Thermotoga sp. RQ2 | TRQ2_0883 | -32 | 5.9 | TGAGAAAACCATTTTCAAA |
| Thermotoga neapolitana DSM 4359 | CTN_0630 | -33 | 6.1 | TGAGAAAATCATTTTCACA |
| Thermotoga petrophila RKU-1 | Tpet_0860 | -32 | 5.9 | TGAGAAAACCATTTTCAAA |
| Thermotoga naphthophila RKU-10 | Tnap_0694 | -32 | 5.9 | TGAGAAAACCATTTTCAAA |
|
Position: -88
Score: 5.9 Sequence: TTTGAAAATGGTTTTCTCA
Locus tag: TM0065
|
||||
| TM0065 | -88 | 5.9 | TTTGAAAATGGTTTTCTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgR | ||||
| Ortholog function: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family | ||||
| Thermotoga maritima MSB8 | TM0065 | -88 | 5.9 | TTTGAAAATGGTTTTCTCA |
| Thermotoga sp. RQ2 | TRQ2_0882 | -88 | 5.9 | TTTGAAAATGGTTTTCTCA |
| Thermotoga neapolitana DSM 4359 | CTN_0629 | -48 | 6.1 | TGTGAAAATGATTTTCTCA |
| Thermotoga petrophila RKU-1 | Tpet_0859 | -88 | 5.9 | TTTGAAAATGGTTTTCTCA |
| Thermotoga naphthophila RKU-10 | Tnap_0695 | -88 | 5.9 | TTTGAAAATGGTTTTCTCA |
|
Position: -103
Score: 5.2 Sequence: TGTAAAAGATTATTTCAAA
Locus tag: TM0070
|
||||
| TM0070 | -103 | 5.2 | TGTAAAAGATTATTTCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xynB | ||||
| Ortholog function: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) | ||||
| Thermotoga maritima MSB8 | TM0070 | -103 | 5.2 | TGTAAAAGATTATTTCAAA |
| Thermotoga petrophila RKU-1 | Tpet_0854 | -103 | 5.2 | TGTAAAAGATTATTTCAAA |
| Thermotoga naphthophila RKU-10 | Tnap_0700 | -103 | 5.2 | TGTAAAAGATTATTTCAAA |
|
Position: -135
Score: 5.2 Sequence: TTTGAAATAATCTTTTACA
Locus tag: TM0071
|
||||
| TM0071 | -135 | 5.2 | TTTGAAATAATCTTTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xloE | ||||
| Ortholog function: Xylose oligosaccharides ABC transporter, sugar-binding protein | ||||
| Thermotoga maritima MSB8 | TM0071 | -135 | 5.2 | TTTGAAATAATCTTTTACA |
| Thermotoga petrophila RKU-1 | Tpet_0853 | -136 | 5.2 | TTTGAAATAATCTTTTACA |
| Thermotoga naphthophila RKU-10 | Tnap_0701 | -135 | 5.2 | TTTGAAATAATCTTTTACA |