Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraR regulog to Thermotoga petrophila RKU-1

Reference regulog properties
Source regulog: AraR - Thermotogales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga petrophila RKU-1
Orthologous TF(s) Tpet_0649
Regulated genes 5
Built upon 35 sites [see more]
Predicted regulatory interactions in Thermotoga petrophila RKU-1
Locus tag Position Score Sequence
Position: -233
Score: 5.4
Sequence: CATTTTGTACGTACATATAT
Position: -50
Score: 5.7
Sequence: AAATTGGTACGTACCTATCT
Locus tag: Tpet_0636
Tpet_0636 -233 5.4 CATTTTGTACGTACATATAT
-50 5.7 AAATTGGTACGTACCTATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araN-II
Ortholog function: Predicted arabinose ABC transporter, substrate binding protein
Thermotoga sp. RQ2 TRQ2_0661 -233 5.4 CATTTTGTACGTACATATAT
-50 5.7 AAATTGGTACGTACCTATCT
Thermotoga petrophila RKU-1 Tpet_0636 -233 5.4 CATTTTGTACGTACATATAT
-50 5.7 AAATTGGTACGTACCTATCT
Thermotoga lettingae TMO Tlet_1143 -169 5 TAATTTGTATGTACATATAT
Position: -221
Score: 5.7
Sequence: AGATAGGTACGTACCAATTT
Locus tag: Tpet_0637
Tpet_0637 -221 5.7 AGATAGGTACGTACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: abf6
Ortholog function: Predicted Aapha-N-arabinofuranosidase (EC 3.2.1.55)
Thermotoga sp. RQ2 TRQ2_0662 -221 5.7 AGATAGGTACGTACCAATTT
-38 5.4 ATATATGTACGTACAAAATG
Thermotoga petrophila RKU-1 Tpet_0637 -221 5.7 AGATAGGTACGTACCAATTT
-38 5.4 ATATATGTACGTACAAAATG
Position: -55
Score: 5
Sequence: GATAATATACGTACCTAAAT
Locus tag: Tpet_0643
Tpet_0643 -55 5 GATAATATACGTACCTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glsA
Ortholog function: Putative glycosyl hydrolase of unknown function (DUF1680)
Thermotoga maritima MSB8 TM0280 -44 5.9 AATAATGTACGTACCTAAAT
Thermotoga sp. RQ2 TRQ2_0668 -58 5.9 AATAATGTACGTACCTAAAT
Thermotoga petrophila RKU-1 Tpet_0643 -55 5 GATAATATACGTACCTAAAT
Thermotoga naphthophila RKU-10 Tnap_0910 -56 4.9 TATAATGTACGTACCTATCA
-55 5 GATAATATACGTACCTAAAT
Position: -150
Score: 6.5
Sequence: ATAAAAGTACGTACCTTTAT
Locus tag: Tpet_0647
Tpet_0647 -150 6.5 ATAAAAGTACGTACCTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Predicted arabinosides or arabinose ABC transport system, substrate-binding protein
Thermotoga sp. RQ2 TRQ2_0671 -150 6.5 ATAAAAGTACGTACCTTTAT
-48 4.7 CCATCGGTACGTACCGTTAT
Thermotoga neapolitana DSM 4359 CTN_0408 -136 6.2 ACAAAAGTACGTACCTTTAT
-33 4.7 CAACTGGTACGTACCGATAT
Thermotoga petrophila RKU-1 Tpet_0647 -150 6.5 ATAAAAGTACGTACCTTTAT
-48 4.7 CCATCGGTACGTACCGTTAT
Thermotoga petrophila RKU-1 Tpet_0646 -150 6.5 ATAAAAGTACGTACCTTTAT
-48 4.7 CCATCGGTACGTACCGTTAT
Thermotoga naphthophila RKU-10 Tnap_0907 -150 6.5 ATAAAAGTACGTACCTTTAT
-48 4.7 CCATCGGTACGTACCGTTAT
Position: -62
Score: 6.5
Sequence: ATAAAGGTACGTACTTTTAT
Locus tag: Tpet_0648
Tpet_0648 -62 6.5 ATAAAGGTACGTACTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araA
Ortholog function: L-arabinose isomerase (EC 5.3.1.4)
Thermotoga maritima MSB8 TM0276 -164 4.7 ATAACGGTACGTACCGATGG
-62 6.3 ATAATGGTACGTACTTTTAT
Thermotoga sp. RQ2 TRQ2_0672 -164 4.7 ATAACGGTACGTACCGATGG
-62 6.5 ATAAAGGTACGTACTTTTAT
Thermotoga neapolitana DSM 4359 CTN_0409 -165 4.7 ATATCGGTACGTACCAGTTG
-62 6.2 ATAAAGGTACGTACTTTTGT
Thermotoga petrophila RKU-1 Tpet_0648 -164 4.7 ATAACGGTACGTACCGATGG
-62 6.5 ATAAAGGTACGTACTTTTAT
Thermotoga naphthophila RKU-10 Tnap_0906 -164 4.7 ATAACGGTACGTACCGATGG
-62 6.5 ATAAAGGTACGTACTTTTAT
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