Regulog GloR - Thermotogales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Fucose-glucose oligosaccharide utilization |
| Effector: | |
| Phylum: | Thermotogae |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - LacI
- By pathway - Fucose-glucose oligosaccharide utilization
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 9 | 2 |
| Thermotoga sp. RQ2 | 9 | 2 |
| Thermotoga neapolitana DSM 4359 | ||
| Thermotoga petrophila RKU-1 | ||
| Thermotoga naphthophila RKU-10 | 5 | 2 |
| Thermotoga lettingae TMO | 1 | 1 |
| Thermosipho africanus TCF52B | ||
| Thermosipho melanesiensis BI429 | ||
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | 11 | 1 |
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| gloR |
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Thermotoga maritima MSB8 Site: position = -82 score = 6.42203 sequence = TACGCAAACGTTTGCTTA Gene: TM0299: Predicted fucose-glucose oligosaccharide utilization regulator, LacI family |
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Thermotoga sp. RQ2 Site: position = -82 score = 6.42203 sequence = TACGCAAACGTTTGCTTA Gene: TRQ2_0632: Predicted fucose-glucose oligosaccharide utilization regulator, LacI family |
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Thermotoga naphthophila RKU-10 Site: position = -129 score = 5.87891 sequence = AACTCAAACGTTTCCGTT Gene: Tnap_0935: Predicted fucose-glucose oligosaccharide utilization regulator, LacI family |
Gene: Tlet_0017: Predicted fucose-glucose oligosaccharide utilization regulator, LacI family |
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*2
Petrotoga mobilis SJ95 Site: position = -43 score = 6.07025 sequence = AACGCAAACGATTGCTTA Gene: Pmob_1599: Predicted fucose-glucose oligosaccharide utilization regulator, LacI family Gene: Pmob_1606: Predicted fucose-glucose oligosaccharide utilization regulator, LacI family |
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Predicted fucose-glucose oligosaccharide utilization regulator, LacI family |
| Tlet_0182 |
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Gene: Pmob_1600: periplasmic binding protein/LacI transcriptional regulator |
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periplasmic binding protein/LacI transcriptional regulator |
| Tlet_0184 |
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Gene: Pmob_1601: ABC transporter related |
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ABC transporter related |
| Pmob_1602 |
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Gene: Pmob_1602: Monosaccharide-transporting ATPase |
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Monosaccharide-transporting ATPase |
| Pmob_1603 |
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Gene: Pmob_1603: RbsD or FucU transport |
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RbsD or FucU transport |
| Tlet_0186 |
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Gene: Pmob_1604: Transaldolase-like protein |
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Transaldolase |
| Pmob_1605 |
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Gene: Pmob_1605: Auxin Efflux Carrier |
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Auxin Efflux Carrier |
| Pmob_0861 |
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Gene: Pmob_1607: methyl-accepting chemotaxis sensory transducer |
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methyl-accepting chemotaxis sensory transducer |
| fucI |
Gene: TM0307: Putative L-fucose isomerase |
Gene: TRQ2_0624: Putative L-fucose isomerase |
Gene: CTN_0381: Putative L-fucose isomerase |
Gene: Tpet_0610: Putative L-fucose isomerase |
Gene: Tnap_0946: Putative L-fucose isomerase |
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Thermotoga lettingae TMO Site: position = -44 score = 5.57813 sequence = ATCGCAAACGAATGCGTT Gene: Tlet_0019: Putative L-fucose isomerase |
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Gene: Pmob_1608: Putative L-fucose isomerase |
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Putative L-fucose isomerase |
| TM0284 |
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Gene: Pmob_1609: Xylulokinase |
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sugar kinase, FGGY family |
| gloE |
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Thermotoga maritima MSB8 Site: position = -173 score = 6.42203 sequence = TAAGCAAACGTTTGCGTA Gene: TM0300: Putative fucose-glucose oligosaccharide ABC transport system, sugar-binding protein |
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Thermotoga sp. RQ2 Site: position = -173 score = 6.42203 sequence = TAAGCAAACGTTTGCGTA Gene: TRQ2_0631: Putative fucose-glucose oligosaccharide ABC transport system, sugar-binding protein |
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Putative fucose-glucose oligosaccharide ABC transport system, sugar-binding protein |
| gloF |
Gene: TM0301: Putative fucose-glucose oligosaccharide ABC transport system, permease protein 1 |
Gene: TRQ2_0630: Putative fucose-glucose oligosaccharide ABC transport system, permease protein 1 |
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Putative fucose-glucose oligosaccharide ABC transport system, permease protein 1 |
| gloG |
Gene: TM0302: Putative fucose-glucose oligosaccharide ABC transport system, permease protein 2 |
Gene: TRQ2_0629: Putative fucose-glucose oligosaccharide ABC transport system, permease protein 2 |
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Putative fucose-glucose oligosaccharide ABC transport system, permease protein 2 |
| gloK |
Gene: TM0303: Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 1 |
Gene: TRQ2_0628: Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 1 |
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Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 1 |
| gloL |
Gene: TM0304: Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 2 |
Gene: TRQ2_0627: Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 2 |
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Putative fucose-glucose oligosaccharide ABC transport system, ATP-binding protein 2 |
| cel74 |
Gene: TM0305: extracellular endo-1,4-glucanase |
Gene: TRQ2_0626: extracellular endo-1,4-glucanase |
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extracellular endo-1,4-glucanase |
| fucA |
Gene: TM0306: Alpha-L-fucosidase (EC 3.2.1.51) |
Gene: TRQ2_0625: Alpha-L-fucosidase (EC 3.2.1.51) |
Gene: CTN_0382: Alpha-L-fucosidase (EC 3.2.1.51) |
Gene: Tpet_0611: Alpha-L-fucosidase (EC 3.2.1.51) |
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Alpha-L-fucosidase (EC 3.2.1.51) |
| mtlD |
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Thermotoga naphthophila RKU-10 Site: position = -55 score = 5.87891 sequence = AACGGAAACGTTTGAGTT Gene: Tnap_0936: Thermostable mannitol dehydrogenase |
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Thermostable mannitol dehydrogenase |
| Tnap_0937 |
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Gene: Tnap_0937: extracellular solute-binding protein family 1 |
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extracellular solute-binding protein family 1 |
| Tnap_0938 |
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Gene: Tnap_0938: binding-protein-dependent transport systems inner membrane component |
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binding-protein-dependent transport systems inner membrane component |
| Tnap_0939 |
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Gene: Tnap_0939: binding-protein-dependent transport systems inner membrane component |
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binding-protein-dependent transport systems inner membrane component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |