Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Thermotoga petrophila RKU-1

Reference regulog properties
Source regulog: KdgR - Thermotogales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: 2-keto-3-deoxygluconate
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga petrophila RKU-1
Orthologous TF(s) Tpet_0859
Regulated genes 6
Built upon 26 sites [see more]
Predicted regulatory interactions in Thermotoga petrophila RKU-1
Locus tag Position Score Sequence
Position: -136
Score: 5.2
Sequence: TTTGAAATAATCTTTTACA
Locus tag: Tpet_0853
Tpet_0853 -136 5.2 TTTGAAATAATCTTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xloE
Ortholog function: Xylose oligosaccharides ABC transporter, sugar-binding protein
Thermotoga maritima MSB8 TM0071 -135 5.2 TTTGAAATAATCTTTTACA
Thermotoga petrophila RKU-1 Tpet_0853 -136 5.2 TTTGAAATAATCTTTTACA
Thermotoga naphthophila RKU-10 Tnap_0701 -135 5.2 TTTGAAATAATCTTTTACA
Position: -103
Score: 5.2
Sequence: TGTAAAAGATTATTTCAAA
Locus tag: Tpet_0854
Tpet_0854 -103 5.2 TGTAAAAGATTATTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynB
Ortholog function: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
Thermotoga maritima MSB8 TM0070 -103 5.2 TGTAAAAGATTATTTCAAA
Thermotoga petrophila RKU-1 Tpet_0854 -103 5.2 TGTAAAAGATTATTTCAAA
Thermotoga naphthophila RKU-10 Tnap_0700 -103 5.2 TGTAAAAGATTATTTCAAA
Position: -88
Score: 5.9
Sequence: TTTGAAAATGGTTTTCTCA
Locus tag: Tpet_0859
Tpet_0859 -88 5.9 TTTGAAAATGGTTTTCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
Thermotoga maritima MSB8 TM0065 -88 5.9 TTTGAAAATGGTTTTCTCA
Thermotoga sp. RQ2 TRQ2_0882 -88 5.9 TTTGAAAATGGTTTTCTCA
Thermotoga neapolitana DSM 4359 CTN_0629 -48 6.1 TGTGAAAATGATTTTCTCA
Thermotoga petrophila RKU-1 Tpet_0859 -88 5.9 TTTGAAAATGGTTTTCTCA
Thermotoga naphthophila RKU-10 Tnap_0695 -88 5.9 TTTGAAAATGGTTTTCTCA
Position: -32
Score: 5.9
Sequence: TGAGAAAACCATTTTCAAA
Locus tag: Tpet_0860
Tpet_0860 -32 5.9 TGAGAAAACCATTTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Thermotoga maritima MSB8 TM0064 -32 5.9 TGAGAAAACCATTTTCAAA
Thermotoga sp. RQ2 TRQ2_0883 -32 5.9 TGAGAAAACCATTTTCAAA
Thermotoga neapolitana DSM 4359 CTN_0630 -33 6.1 TGAGAAAATCATTTTCACA
Thermotoga petrophila RKU-1 Tpet_0860 -32 5.9 TGAGAAAACCATTTTCAAA
Thermotoga naphthophila RKU-10 Tnap_0694 -32 5.9 TGAGAAAACCATTTTCAAA
Position: -139
Score: 6
Sequence: TTTGAAAGTTCCTTTCACA
Locus tag: Tpet_0863
Tpet_0863 -139 6 TTTGAAAGTTCCTTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynA1
Ortholog function: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Thermotoga maritima MSB8 TM0061 -138 6 TTTGAAAGTTCCTTTCACA
Thermotoga sp. RQ2 TRQ2_0885 -138 6 TTTGAAAGTTCCTTTCACA
Thermotoga neapolitana DSM 4359 CTN_0632 -91 5.9 TTTGAAAGCCTTTTTCACA
Thermotoga petrophila RKU-1 Tpet_0863 -139 6 TTTGAAAGTTCCTTTCACA
Thermotoga naphthophila RKU-10 Tnap_0691 -138 6 TTTGAAAGTTCCTTTCACA
Position: -199
Score: 6
Sequence: TGTGAAAGGAACTTTCAAA
Locus tag: Tpet_0864
Tpet_0864 -199 6 TGTGAAAGGAACTTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xtpF
Ortholog function: Xylan oligosaccharide ABC transporter, permease component 1
Thermotoga maritima MSB8 TM0060 -199 6 TGTGAAAGGAACTTTCAAA
Thermotoga sp. RQ2 TRQ2_0886 -199 6 TGTGAAAGGAACTTTCAAA
Thermotoga neapolitana DSM 4359 CTN_0634 -191 5.9 TGTGAAAAAGGCTTTCAAA
Thermotoga petrophila RKU-1 Tpet_0864 -199 6 TGTGAAAGGAACTTTCAAA
Thermotoga naphthophila RKU-10 Tnap_0690 -198 6 TGTGAAAGGAACTTTCAAA
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