Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of XylR regulog to Thermotoga sp. RQ2

Reference regulog properties
Source regulog: XylR - Thermotogales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose; Glucose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga sp. RQ2
Orthologous TF(s) TRQ2_0837
Regulated genes 8
Built upon 39 sites [see more]
Predicted regulatory interactions in Thermotoga sp. RQ2
Locus tag Position Score Sequence
Position: -51
Score: 5.4
Sequence: GAAATTTCTTTAGAGGAAAAAAT
Locus tag: TRQ2_0622
TRQ2_0622 -51 5.4 GAAATTTCTTTAGAGGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xtpN
Ortholog function: Predicted xylose oligosaccharide ABC transporter, substrate-binding component
Thermotoga maritima MSB8 TM0309 -45 5.4 GAAATTTCTTTAGAGGAAAAAAT
Thermotoga sp. RQ2 TRQ2_0622 -51 5.4 GAAATTTCTTTAGAGGAAAAAAT
Thermotoga neapolitana DSM 4359 CTN_0379 -65 4.3 AaaATTgtTTGgtAgaAAAaAAg
Thermotoga neapolitana DSM 4359 CTN_0378 -65 4.3 AaaATTgtTTGgtAgaAAAaAAg
Thermotoga petrophila RKU-1 Tpet_0608 -51 4.9 GAAAGTTCTTTAGAGGAAAAAAT
Thermotoga naphthophila RKU-10 Tnap_0948 -13 4.9 gaaATTTCTTtAgtgaAAAaAAT
Position: -61
Score: 5.2
Sequence: ATTATTTCCCGCATATAATTAAT
Locus tag: TRQ2_0837
TRQ2_0837 -61 5.2 ATTATTTCCCGCATATAATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose-responsive transcription regulator, ROK family
Thermotoga maritima MSB8 TM0110 -61 5.4 ATTATTTCCTGCATATAATTAAT
Thermotoga sp. RQ2 TRQ2_0837 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga neapolitana DSM 4359 CTN_0581 -34 5.1 ATTAATTCCTGCATATAATTAAT
Thermotoga petrophila RKU-1 Tpet_0814 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga naphthophila RKU-10 Tnap_0740 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga lettingae TMO Tlet_0357 -52 5.2 AATTTTTCGAGGAAATAAATAAT
Position: -53
Score: 5.8
Sequence: AATATTTCCCGAAAGGAAAAAAT
Locus tag: TRQ2_0876
TRQ2_0876 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xloE
Ortholog function: Xylose oligosaccharides ABC transporter, sugar-binding protein
Thermotoga maritima MSB8 TM0071 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga sp. RQ2 TRQ2_0876 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga neapolitana DSM 4359 CTN_0622 -52 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga petrophila RKU-1 Tpet_0853 -54 5.4 AATATTTCCCGAAAGGAAAAAAA
Thermotoga naphthophila RKU-10 Tnap_0701 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga lettingae TMO Tlet_0350 -52 5.2 AATTTTTCGAGGAAATAAATAAT
Position: -189
Score: 5.8
Sequence: ATTTTTTCCTTTCGGGAAATATT
Locus tag: TRQ2_0877
TRQ2_0877 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynB
Ortholog function: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
Thermotoga maritima MSB8 TM0070 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Thermotoga sp. RQ2 TRQ2_0877 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Thermotoga neapolitana DSM 4359 CTN_0623 -190 5.8 ATTTTTTCCTTTCGGGAAATATT
Thermotoga petrophila RKU-1 Tpet_0854 -189 5.4 TTTTTTTCCTTTCGGGAAATATT
Thermotoga naphthophila RKU-10 Tnap_0700 -189 5.8 ATTTTTTCCTTTCGGGAAATATT
Position: -87
Score: 5.8
Sequence: ATTTTTTCTTTACAAAAAATAAC
Locus tag: TRQ2_0885
TRQ2_0885 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynA1
Ortholog function: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Thermotoga maritima MSB8 TM0061 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Thermotoga sp. RQ2 TRQ2_0885 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Thermotoga neapolitana DSM 4359 CTN_0632 -41 5.3 ATTTTTTCTCCGTAAGAAATAAC
Thermotoga petrophila RKU-1 Tpet_0863 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Thermotoga naphthophila RKU-10 Tnap_0691 -87 5.8 ATTTTTTCTTTACAAAAAATAAC
Position: -254
Score: 5.8
Sequence: GTTATTTTTTGTAAAGAAAAAAT
Locus tag: TRQ2_0886
TRQ2_0886 -254 5.8 GTTATTTTTTGTAAAGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xtpF
Ortholog function: Xylan oligosaccharide ABC transporter, permease component 1
Thermotoga maritima MSB8 TM0060 -254 5.8 GTTATTTTTTGTAAAGAAAAAAT
Thermotoga sp. RQ2 TRQ2_0886 -254 5.8 GTTATTTTTTGTAAAGAAAAAAT
Thermotoga neapolitana DSM 4359 CTN_0634 -245 5.3 GTTATTTCTTACGGAGAAAAAAT
Thermotoga petrophila RKU-1 Tpet_0864 -255 5.8 GTTATTTTTTGTAAAGAAAAAAT
Thermotoga naphthophila RKU-10 Tnap_0690 -253 5.8 GTTATTTTTTGTAAAGAAAAAAT
Position: -38
Score: 5
Sequence: ATAATTGATTGATAGAAAAAATT
Locus tag: TRQ2_1162
TRQ2_1162 -38 5 ATAATTGATTGATAGAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Thermotoga maritima MSB8 TM1667 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga sp. RQ2 TRQ2_1162 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga neapolitana DSM 4359 CTN_0720 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga petrophila RKU-1 Tpet_1124 -38 5 ATAATTGATTGATAGAAAAAATT
Thermotoga naphthophila RKU-10 Tnap_1139 -38 5 ATAATTGATTGATAGAAAAAATT
Position: -40
Score: 5.2
Sequence: GTTTTTTCCTTTCTGAAAATAAC
Locus tag: TRQ2_1549
TRQ2_1549 -40 5.2 GTTTTTTCCTTTCTGAAAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynA3
Ortholog function: Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8)
Thermotoga sp. RQ2 TRQ2_1549 -40 5.2 GTTTTTTCCTTTCTGAAAATAAC
Thermotoga neapolitana DSM 4359 CTN_1302 -41 5.2 GTTTTTTCCTTTCTGAAAATAAC
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