Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TreR regulog to Thermotoga petrophila RKU-1

Reference regulog properties
Source regulog: TreR - Thermotogales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga petrophila RKU-1
Orthologous TF(s) Tpet_0527
Regulated genes 2
Built upon 19 sites [see more]
Predicted regulatory interactions in Thermotoga petrophila RKU-1
Locus tag Position Score Sequence
Position: -38
Score: 6.1
Sequence: ATTAATTCAAGTTACGAATAAAT
Locus tag: Tpet_0528
Tpet_0528 -38 6.1 ATTAATTCAAGTTACGAATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treT
Ortholog function: Trehalose synthase, nucleoside diphosphate glucose dependent
Thermotoga maritima MSB8 TM0392 -38 6.1 ATTAATTCAAGTTACGAATAAAT
Thermotoga sp. RQ2 TRQ2_0542 -38 6.1 ATTAATTCAAGTTACGAATAAAT
Thermotoga neapolitana DSM 4359 CTN_0277 -37 6.1 ATTAATTCAAGTTACGAATAAAT
Thermotoga petrophila RKU-1 Tpet_0528 -38 6.1 ATTAATTCAAGTTACGAATAAAT
Thermotoga naphthophila RKU-10 Tnap_0184 -38 6.1 ATTAATTCAAGTTACGAATAAAT
Thermotoga lettingae TMO Tlet_1841 -8 5.7 ATTAATTCATGTTACGACAAAAT
Thermosipho africanus TCF52B THA_843 -35 5.9 ATTTTTTCGAAATTCGAATTAAA
Thermosipho melanesiensis BI429 Tmel_1821 -38 5.6 ATTATTTCGAAATTCAAAAAAAT
Fervidobacterium nodosum Rt17-B1 Fnod_0451 -127 5.9 ATATATTCGAAATTCGAATATAT
Position: -143
Score: 5.9
Sequence: TTATTTTCATTTAACGAAAAAAA
Locus tag: Tpet_0953
Tpet_0953 -143 5.9 TTATTTTCATTTAACGAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amyE
Ortholog function: extracellular alpha-amylase precursor
Thermotoga neapolitana DSM 4359 CTN_0781 -478 5.9 tTaTtTTCATTTAACGAAaAAAa
Thermotoga petrophila RKU-1 Tpet_0953 -143 5.9 TTATTTTCATTTAACGAAAAAAA
Thermotoga naphthophila RKU-10 Tnap_0601 -143 5.9 TTATTTTCATTTAACGAAAAAAA
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