Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of XylR regulog to Thermotoga lettingae TMO

Reference regulog properties
Source regulog: XylR - Thermotogales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose; Glucose
Phylum: Thermotogae
Propagated regulon:
Target genome Thermotoga lettingae TMO
Orthologous TF(s) Tlet_0357
Regulated genes 3
Built upon 39 sites [see more]
Predicted regulatory interactions in Thermotoga lettingae TMO
Locus tag Position Score Sequence
Position: -52
Score: 5.2
Sequence: AATTTTTCGAGGAAATAAATAAT
Locus tag: Tlet_0350
Tlet_0350 -52 5.2 AATTTTTCGAGGAAATAAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xloE
Ortholog function: Xylose oligosaccharides ABC transporter, sugar-binding protein
Thermotoga maritima MSB8 TM0071 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga sp. RQ2 TRQ2_0876 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga neapolitana DSM 4359 CTN_0622 -52 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga petrophila RKU-1 Tpet_0853 -54 5.4 AATATTTCCCGAAAGGAAAAAAA
Thermotoga naphthophila RKU-10 Tnap_0701 -53 5.8 AATATTTCCCGAAAGGAAAAAAT
Thermotoga lettingae TMO Tlet_0350 -52 5.2 AATTTTTCGAGGAAATAAATAAT
Position: -183
Score: 5.2
Sequence: AATTTTTCGGGGAAAGAAATAAT
Locus tag: Tlet_0358
Tlet_0358 -183 5.2 AATTTTTCGGGGAAAGAAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylF
Ortholog function: Xylose ABC transporter, permease component
Thermotoga maritima MSB8 TM0112 -61 5.4 ATTATTTCCTGCATATAATTAAT
Thermotoga sp. RQ2 TRQ2_0835 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga neapolitana DSM 4359 CTN_0578 -34 5.1 ATTAATTCCTGCATATAATTAAT
Thermotoga petrophila RKU-1 Tpet_0812 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga naphthophila RKU-10 Tnap_0742 -61 5.2 ATTATTTCCCGCATATAATTAAT
Thermotoga lettingae TMO Tlet_0358 -183 5.2 AATTTTTCGGGGAAAGAAATAAT
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