Collection of regulogs in Clostridiaceae taxonomic group

General statistics
Genomes	20
TF regulogs	0
TF regulons	0
TF binding sites	0
RNA regulogs	40
RNA regulons	566
RNA sites	968

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
	TF		RNA		Total
Genomes	Regulons	Sites	Regulons	Sites	Regulons	Sites
Clostridium acetobutylicum ATCC 824	0	0	33	59	33	59
Clostridium bartlettii DSM 16795	0	0	28	55	28	55
Clostridium beijerincki NCIMB 8052	0	0	34	65	34	65
Clostridium bolteae ATCC BAA-613	0	0	24	40	24	40
Clostridium botulinum A str. ATCC 3502	0	0	34	64	34	64
Clostridium butyricum 5521	0	0	30	51	30	51
Clostridium cellulolyticum H10	0	0	29	42	29	42
Clostridium difficile 630	0	0	31	67	31	67
Clostridium hiranonis DSM 13275	0	0	28	41	28	41
Clostridium kluyveri DSM 555	0	0	32	76	32	76
Clostridium leptum DSM 753	0	0	18	20	18	20
Clostridium nexile DSM 1787	0	0	25	32	25	32
Clostridium novyi NT	0	0	32	57	32	57
Clostridium perfringens ATCC 13124	0	0	33	61	33	61
Clostridium phytofermentans ISDg	0	0	26	37	26	37
Clostridium scindens ATCC 35704	0	0	25	34	25	34
Clostridium sp. L2-50	0	0	19	23	19	23
Clostridium sp. OhILAs	0	0	35	63	35	63
Clostridium sp. SS2/1	0	0	18	25	18	25
Clostridium tetani E88	0	0	32	56	32	56

Genomic distribution of regulons
Family	Type	Regulator																					Function
RF00050	RNA	FMN	1 FMN Clostridium sp. OhILAs	3 FMN Clostridium sp. SS2/1	1 FMN Clostridium sp. L2-50	1 FMN Clostridium leptum DSM 753	2 FMN Clostridium cellulolyticum H10	1 FMN Clostridium phytofermentans ISDg	2 FMN Clostridium acetobutylicum ATCC 824	1 FMN Clostridium bolteae ATCC BAA-613	3 FMN Clostridium difficile 630	3 FMN Clostridium bartlettii DSM 16795	2 FMN Clostridium butyricum 5521	1 FMN Clostridium nexile DSM 1787	2 FMN Clostridium beijerincki NCIMB 8052	2 FMN Clostridium hiranonis DSM 13275	3 FMN Clostridium botulinum A str. ATCC 3502	2 FMN Clostridium scindens ATCC 35704	2 FMN Clostridium kluyveri DSM 555	2 FMN Clostridium novyi NT	2 FMN Clostridium perfringens ATCC 13124	2 FMN Clostridium tetani E88	Riboflavin biosynthesis
RF00059	RNA	TPP	3 TPP Clostridium sp. OhILAs	2 TPP Clostridium sp. SS2/1	1 TPP Clostridium sp. L2-50	2 TPP Clostridium leptum DSM 753	2 TPP Clostridium cellulolyticum H10	1 TPP Clostridium phytofermentans ISDg	5 TPP Clostridium acetobutylicum ATCC 824	3 TPP Clostridium bolteae ATCC BAA-613	3 TPP Clostridium difficile 630	2 TPP Clostridium bartlettii DSM 16795	3 TPP Clostridium butyricum 5521	4 TPP Clostridium nexile DSM 1787	4 TPP Clostridium beijerincki NCIMB 8052	2 TPP Clostridium hiranonis DSM 13275	4 TPP Clostridium botulinum A str. ATCC 3502	3 TPP Clostridium scindens ATCC 35704	5 TPP Clostridium kluyveri DSM 555	3 TPP Clostridium novyi NT	5 TPP Clostridium perfringens ATCC 13124	3 TPP Clostridium tetani E88	Thiamine biosynthesis
RF00080	RNA	yybP-ykoY		2 yybP-ykoY Clostridium sp. SS2/1	2 yybP-ykoY Clostridium sp. L2-50		2 yybP-ykoY Clostridium cellulolyticum H10	3 yybP-ykoY Clostridium phytofermentans ISDg		3 yybP-ykoY Clostridium bolteae ATCC BAA-613	1 yybP-ykoY Clostridium difficile 630	2 yybP-ykoY Clostridium bartlettii DSM 16795	2 yybP-ykoY Clostridium butyricum 5521	2 yybP-ykoY Clostridium nexile DSM 1787	4 yybP-ykoY Clostridium beijerincki NCIMB 8052	2 yybP-ykoY Clostridium hiranonis DSM 13275	3 yybP-ykoY Clostridium botulinum A str. ATCC 3502	2 yybP-ykoY Clostridium scindens ATCC 35704	2 yybP-ykoY Clostridium kluyveri DSM 555		2 yybP-ykoY Clostridium perfringens ATCC 13124	1 yybP-ykoY Clostridium tetani E88
RF00114	RNA	S15		1 S15 Clostridium sp. SS2/1	1 S15 Clostridium sp. L2-50					1 S15 Clostridium bolteae ATCC BAA-613													Ribosome biogenesis
RF00162	RNA	SAM	4 SAM Clostridium sp. OhILAs		1 SAM Clostridium sp. L2-50	1 SAM Clostridium leptum DSM 753	1 SAM Clostridium cellulolyticum H10	1 SAM Clostridium phytofermentans ISDg	6 SAM Clostridium acetobutylicum ATCC 824	1 SAM Clostridium bolteae ATCC BAA-613	6 SAM Clostridium difficile 630	4 SAM Clostridium bartlettii DSM 16795	4 SAM Clostridium butyricum 5521	1 SAM Clostridium nexile DSM 1787	5 SAM Clostridium beijerincki NCIMB 8052	3 SAM Clostridium hiranonis DSM 13275	5 SAM Clostridium botulinum A str. ATCC 3502	1 SAM Clostridium scindens ATCC 35704	18 SAM Clostridium kluyveri DSM 555	3 SAM Clostridium novyi NT	2 SAM Clostridium perfringens ATCC 13124	4 SAM Clostridium tetani E88	Methionine biosynthesis
RF00167	RNA	Purine	2 Purine Clostridium sp. OhILAs				1 Purine Clostridium cellulolyticum H10		3 Purine Clostridium acetobutylicum ATCC 824	2 Purine Clostridium bolteae ATCC BAA-613	4 Purine Clostridium difficile 630	2 Purine Clostridium bartlettii DSM 16795	3 Purine Clostridium butyricum 5521		4 Purine Clostridium beijerincki NCIMB 8052	1 Purine Clostridium hiranonis DSM 13275	6 Purine Clostridium botulinum A str. ATCC 3502	1 Purine Clostridium scindens ATCC 35704	3 Purine Clostridium kluyveri DSM 555	4 Purine Clostridium novyi NT	4 Purine Clostridium perfringens ATCC 13124	1 Purine Clostridium tetani E88	Purine metabolism
RF00168	RNA	Lysine	2 Lysine Clostridium sp. OhILAs		1 Lysine Clostridium sp. L2-50	1 Lysine Clostridium leptum DSM 753	1 Lysine Clostridium cellulolyticum H10	2 Lysine Clostridium phytofermentans ISDg	1 Lysine Clostridium acetobutylicum ATCC 824	2 Lysine Clostridium bolteae ATCC BAA-613	4 Lysine Clostridium difficile 630	3 Lysine Clostridium bartlettii DSM 16795	1 Lysine Clostridium butyricum 5521	1 Lysine Clostridium nexile DSM 1787	2 Lysine Clostridium beijerincki NCIMB 8052	3 Lysine Clostridium hiranonis DSM 13275	3 Lysine Clostridium botulinum A str. ATCC 3502	1 Lysine Clostridium scindens ATCC 35704	2 Lysine Clostridium kluyveri DSM 555	3 Lysine Clostridium novyi NT	3 Lysine Clostridium perfringens ATCC 13124	2 Lysine Clostridium tetani E88	Lysine biosynthesis
RF00174	RNA	Cobalamin	8 Cobalamin Clostridium sp. OhILAs	1 Cobalamin Clostridium sp. SS2/1		1 Cobalamin Clostridium leptum DSM 753	2 Cobalamin Clostridium cellulolyticum H10	4 Cobalamin Clostridium phytofermentans ISDg	2 Cobalamin Clostridium acetobutylicum ATCC 824	1 Cobalamin Clostridium bolteae ATCC BAA-613	3 Cobalamin Clostridium difficile 630	4 Cobalamin Clostridium bartlettii DSM 16795	2 Cobalamin Clostridium butyricum 5521	1 Cobalamin Clostridium nexile DSM 1787	1 Cobalamin Clostridium beijerincki NCIMB 8052	1 Cobalamin Clostridium hiranonis DSM 13275	1 Cobalamin Clostridium botulinum A str. ATCC 3502	2 Cobalamin Clostridium scindens ATCC 35704	1 Cobalamin Clostridium kluyveri DSM 555	3 Cobalamin Clostridium novyi NT	4 Cobalamin Clostridium perfringens ATCC 13124	8 Cobalamin Clostridium tetani E88	Cobalamin biosynthesis
RF00230	RNA	T-box(Ala)	1 T-box(Ala) Clostridium sp. OhILAs			1 T-box(Ala) Clostridium leptum DSM 753	2 T-box(Ala) Clostridium cellulolyticum H10	1 T-box(Ala) Clostridium phytofermentans ISDg	1 T-box(Ala) Clostridium acetobutylicum ATCC 824		1 T-box(Ala) Clostridium difficile 630	1 T-box(Ala) Clostridium bartlettii DSM 16795	2 T-box(Ala) Clostridium butyricum 5521		2 T-box(Ala) Clostridium beijerincki NCIMB 8052	1 T-box(Ala) Clostridium hiranonis DSM 13275	1 T-box(Ala) Clostridium botulinum A str. ATCC 3502		1 T-box(Ala) Clostridium kluyveri DSM 555	2 T-box(Ala) Clostridium novyi NT	2 T-box(Ala) Clostridium perfringens ATCC 13124	1 T-box(Ala) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Arg)	1 T-box(Arg) Clostridium sp. OhILAs						1 T-box(Arg) Clostridium acetobutylicum ATCC 824		4 T-box(Arg) Clostridium difficile 630	4 T-box(Arg) Clostridium bartlettii DSM 16795	1 T-box(Arg) Clostridium butyricum 5521		1 T-box(Arg) Clostridium beijerincki NCIMB 8052	2 T-box(Arg) Clostridium hiranonis DSM 13275	1 T-box(Arg) Clostridium botulinum A str. ATCC 3502			1 T-box(Arg) Clostridium novyi NT	1 T-box(Arg) Clostridium perfringens ATCC 13124	1 T-box(Arg) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Asn)	1 T-box(Asn) Clostridium sp. OhILAs	1 T-box(Asn) Clostridium sp. SS2/1	1 T-box(Asn) Clostridium sp. L2-50	1 T-box(Asn) Clostridium leptum DSM 753		1 T-box(Asn) Clostridium phytofermentans ISDg	1 T-box(Asn) Clostridium acetobutylicum ATCC 824	1 T-box(Asn) Clostridium bolteae ATCC BAA-613	2 T-box(Asn) Clostridium difficile 630	3 T-box(Asn) Clostridium bartlettii DSM 16795			1 T-box(Asn) Clostridium beijerincki NCIMB 8052	1 T-box(Asn) Clostridium hiranonis DSM 13275	1 T-box(Asn) Clostridium botulinum A str. ATCC 3502	1 T-box(Asn) Clostridium scindens ATCC 35704	2 T-box(Asn) Clostridium kluyveri DSM 555	1 T-box(Asn) Clostridium novyi NT	2 T-box(Asn) Clostridium perfringens ATCC 13124	2 T-box(Asn) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Asp)	1 T-box(Asp) Clostridium sp. OhILAs				1 T-box(Asp) Clostridium cellulolyticum H10		1 T-box(Asp) Clostridium acetobutylicum ATCC 824								1 T-box(Asp) Clostridium botulinum A str. ATCC 3502						Amino acid metabolism
	RNA	T-box(Cys)	1 T-box(Cys) Clostridium sp. OhILAs	1 T-box(Cys) Clostridium sp. SS2/1				1 T-box(Cys) Clostridium phytofermentans ISDg	3 T-box(Cys) Clostridium acetobutylicum ATCC 824				1 T-box(Cys) Clostridium butyricum 5521	1 T-box(Cys) Clostridium nexile DSM 1787	1 T-box(Cys) Clostridium beijerincki NCIMB 8052		3 T-box(Cys) Clostridium botulinum A str. ATCC 3502	1 T-box(Cys) Clostridium scindens ATCC 35704	2 T-box(Cys) Clostridium kluyveri DSM 555	1 T-box(Cys) Clostridium novyi NT	4 T-box(Cys) Clostridium perfringens ATCC 13124	1 T-box(Cys) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Gly)	1 T-box(Gly) Clostridium sp. OhILAs					1 T-box(Gly) Clostridium phytofermentans ISDg	1 T-box(Gly) Clostridium acetobutylicum ATCC 824				1 T-box(Gly) Clostridium butyricum 5521		1 T-box(Gly) Clostridium beijerincki NCIMB 8052		1 T-box(Gly) Clostridium botulinum A str. ATCC 3502		1 T-box(Gly) Clostridium kluyveri DSM 555	1 T-box(Gly) Clostridium novyi NT	1 T-box(Gly) Clostridium perfringens ATCC 13124	1 T-box(Gly) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(His)	1 T-box(His) Clostridium sp. OhILAs								1 T-box(His) Clostridium difficile 630					1 T-box(His) Clostridium hiranonis DSM 13275							Amino acid metabolism
	RNA	T-box(Ile)		1 T-box(Ile) Clostridium sp. SS2/1	1 T-box(Ile) Clostridium sp. L2-50	1 T-box(Ile) Clostridium leptum DSM 753	1 T-box(Ile) Clostridium cellulolyticum H10	1 T-box(Ile) Clostridium phytofermentans ISDg	2 T-box(Ile) Clostridium acetobutylicum ATCC 824	1 T-box(Ile) Clostridium bolteae ATCC BAA-613	1 T-box(Ile) Clostridium difficile 630	2 T-box(Ile) Clostridium bartlettii DSM 16795	2 T-box(Ile) Clostridium butyricum 5521	1 T-box(Ile) Clostridium nexile DSM 1787	2 T-box(Ile) Clostridium beijerincki NCIMB 8052	1 T-box(Ile) Clostridium hiranonis DSM 13275	1 T-box(Ile) Clostridium botulinum A str. ATCC 3502	1 T-box(Ile) Clostridium scindens ATCC 35704	2 T-box(Ile) Clostridium kluyveri DSM 555	3 T-box(Ile) Clostridium novyi NT	2 T-box(Ile) Clostridium perfringens ATCC 13124	2 T-box(Ile) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Leu)	1 T-box(Leu) Clostridium sp. OhILAs	1 T-box(Leu) Clostridium sp. SS2/1	1 T-box(Leu) Clostridium sp. L2-50	1 T-box(Leu) Clostridium leptum DSM 753	2 T-box(Leu) Clostridium cellulolyticum H10	2 T-box(Leu) Clostridium phytofermentans ISDg	2 T-box(Leu) Clostridium acetobutylicum ATCC 824	1 T-box(Leu) Clostridium bolteae ATCC BAA-613	2 T-box(Leu) Clostridium difficile 630	1 T-box(Leu) Clostridium bartlettii DSM 16795	2 T-box(Leu) Clostridium butyricum 5521	1 T-box(Leu) Clostridium nexile DSM 1787	1 T-box(Leu) Clostridium beijerincki NCIMB 8052	1 T-box(Leu) Clostridium hiranonis DSM 13275	1 T-box(Leu) Clostridium botulinum A str. ATCC 3502	1 T-box(Leu) Clostridium scindens ATCC 35704	5 T-box(Leu) Clostridium kluyveri DSM 555	2 T-box(Leu) Clostridium novyi NT	1 T-box(Leu) Clostridium perfringens ATCC 13124	1 T-box(Leu) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Lys)													1 T-box(Lys) Clostridium beijerincki NCIMB 8052								Amino acid metabolism
	RNA	T-box(Met)	4 T-box(Met) Clostridium sp. OhILAs				1 T-box(Met) Clostridium cellulolyticum H10	1 T-box(Met) Clostridium phytofermentans ISDg	1 T-box(Met) Clostridium acetobutylicum ATCC 824		1 T-box(Met) Clostridium difficile 630	1 T-box(Met) Clostridium bartlettii DSM 16795	1 T-box(Met) Clostridium butyricum 5521	1 T-box(Met) Clostridium nexile DSM 1787	1 T-box(Met) Clostridium beijerincki NCIMB 8052	1 T-box(Met) Clostridium hiranonis DSM 13275	1 T-box(Met) Clostridium botulinum A str. ATCC 3502	1 T-box(Met) Clostridium scindens ATCC 35704	1 T-box(Met) Clostridium kluyveri DSM 555	1 T-box(Met) Clostridium novyi NT	1 T-box(Met) Clostridium perfringens ATCC 13124	1 T-box(Met) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Phe)	1 T-box(Phe) Clostridium sp. OhILAs	1 T-box(Phe) Clostridium sp. SS2/1	1 T-box(Phe) Clostridium sp. L2-50	1 T-box(Phe) Clostridium leptum DSM 753	1 T-box(Phe) Clostridium cellulolyticum H10	1 T-box(Phe) Clostridium phytofermentans ISDg	1 T-box(Phe) Clostridium acetobutylicum ATCC 824	1 T-box(Phe) Clostridium bolteae ATCC BAA-613	1 T-box(Phe) Clostridium difficile 630	1 T-box(Phe) Clostridium bartlettii DSM 16795	1 T-box(Phe) Clostridium butyricum 5521	1 T-box(Phe) Clostridium nexile DSM 1787	1 T-box(Phe) Clostridium beijerincki NCIMB 8052	1 T-box(Phe) Clostridium hiranonis DSM 13275	1 T-box(Phe) Clostridium botulinum A str. ATCC 3502	1 T-box(Phe) Clostridium scindens ATCC 35704	1 T-box(Phe) Clostridium kluyveri DSM 555	1 T-box(Phe) Clostridium novyi NT	1 T-box(Phe) Clostridium perfringens ATCC 13124	2 T-box(Phe) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Pro)	1 T-box(Pro) Clostridium sp. OhILAs					1 T-box(Pro) Clostridium phytofermentans ISDg	1 T-box(Pro) Clostridium acetobutylicum ATCC 824	1 T-box(Pro) Clostridium bolteae ATCC BAA-613	1 T-box(Pro) Clostridium difficile 630	1 T-box(Pro) Clostridium bartlettii DSM 16795	1 T-box(Pro) Clostridium butyricum 5521	1 T-box(Pro) Clostridium nexile DSM 1787	1 T-box(Pro) Clostridium beijerincki NCIMB 8052	1 T-box(Pro) Clostridium hiranonis DSM 13275	1 T-box(Pro) Clostridium botulinum A str. ATCC 3502	1 T-box(Pro) Clostridium scindens ATCC 35704	1 T-box(Pro) Clostridium kluyveri DSM 555	1 T-box(Pro) Clostridium novyi NT	1 T-box(Pro) Clostridium perfringens ATCC 13124	1 T-box(Pro) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Ser)	1 T-box(Ser) Clostridium sp. OhILAs				1 T-box(Ser) Clostridium cellulolyticum H10	1 T-box(Ser) Clostridium phytofermentans ISDg	1 T-box(Ser) Clostridium acetobutylicum ATCC 824		1 T-box(Ser) Clostridium difficile 630		1 T-box(Ser) Clostridium butyricum 5521		1 T-box(Ser) Clostridium beijerincki NCIMB 8052	1 T-box(Ser) Clostridium hiranonis DSM 13275	2 T-box(Ser) Clostridium botulinum A str. ATCC 3502		1 T-box(Ser) Clostridium kluyveri DSM 555	2 T-box(Ser) Clostridium novyi NT	1 T-box(Ser) Clostridium perfringens ATCC 13124	2 T-box(Ser) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Thr)	2 T-box(Thr) Clostridium sp. OhILAs	1 T-box(Thr) Clostridium sp. SS2/1	1 T-box(Thr) Clostridium sp. L2-50	1 T-box(Thr) Clostridium leptum DSM 753	1 T-box(Thr) Clostridium cellulolyticum H10	2 T-box(Thr) Clostridium phytofermentans ISDg	1 T-box(Thr) Clostridium acetobutylicum ATCC 824	1 T-box(Thr) Clostridium bolteae ATCC BAA-613	1 T-box(Thr) Clostridium difficile 630	1 T-box(Thr) Clostridium bartlettii DSM 16795	2 T-box(Thr) Clostridium butyricum 5521	1 T-box(Thr) Clostridium nexile DSM 1787	2 T-box(Thr) Clostridium beijerincki NCIMB 8052	1 T-box(Thr) Clostridium hiranonis DSM 13275	1 T-box(Thr) Clostridium botulinum A str. ATCC 3502			1 T-box(Thr) Clostridium novyi NT	1 T-box(Thr) Clostridium perfringens ATCC 13124	1 T-box(Thr) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Trp)	3 T-box(Trp) Clostridium sp. OhILAs	2 T-box(Trp) Clostridium sp. SS2/1	2 T-box(Trp) Clostridium sp. L2-50	2 T-box(Trp) Clostridium leptum DSM 753	1 T-box(Trp) Clostridium cellulolyticum H10	2 T-box(Trp) Clostridium phytofermentans ISDg	3 T-box(Trp) Clostridium acetobutylicum ATCC 824	2 T-box(Trp) Clostridium bolteae ATCC BAA-613	2 T-box(Trp) Clostridium difficile 630	3 T-box(Trp) Clostridium bartlettii DSM 16795	3 T-box(Trp) Clostridium butyricum 5521	2 T-box(Trp) Clostridium nexile DSM 1787	2 T-box(Trp) Clostridium beijerincki NCIMB 8052	2 T-box(Trp) Clostridium hiranonis DSM 13275	2 T-box(Trp) Clostridium botulinum A str. ATCC 3502	1 T-box(Trp) Clostridium scindens ATCC 35704	3 T-box(Trp) Clostridium kluyveri DSM 555	2 T-box(Trp) Clostridium novyi NT	1 T-box(Trp) Clostridium perfringens ATCC 13124	1 T-box(Trp) Clostridium tetani E88	Amino acid metabolism
	RNA	T-box(Tyr)	1 T-box(Tyr) Clostridium sp. OhILAs			1 T-box(Tyr) Clostridium leptum DSM 753	2 T-box(Tyr) Clostridium cellulolyticum H10	1 T-box(Tyr) Clostridium phytofermentans ISDg	1 T-box(Tyr) Clostridium acetobutylicum ATCC 824	2 T-box(Tyr) Clostridium bolteae ATCC BAA-613	1 T-box(Tyr) Clostridium difficile 630	2 T-box(Tyr) Clostridium bartlettii DSM 16795		1 T-box(Tyr) Clostridium nexile DSM 1787	1 T-box(Tyr) Clostridium beijerincki NCIMB 8052	1 T-box(Tyr) Clostridium hiranonis DSM 13275		1 T-box(Tyr) Clostridium scindens ATCC 35704		1 T-box(Tyr) Clostridium novyi NT			Amino acid metabolism
	RNA	T-box(Val)	1 T-box(Val) Clostridium sp. OhILAs		2 T-box(Val) Clostridium sp. L2-50		1 T-box(Val) Clostridium cellulolyticum H10	2 T-box(Val) Clostridium phytofermentans ISDg	2 T-box(Val) Clostridium acetobutylicum ATCC 824		1 T-box(Val) Clostridium difficile 630	1 T-box(Val) Clostridium bartlettii DSM 16795	1 T-box(Val) Clostridium butyricum 5521	1 T-box(Val) Clostridium nexile DSM 1787	2 T-box(Val) Clostridium beijerincki NCIMB 8052	1 T-box(Val) Clostridium hiranonis DSM 13275	1 T-box(Val) Clostridium botulinum A str. ATCC 3502	2 T-box(Val) Clostridium scindens ATCC 35704	1 T-box(Val) Clostridium kluyveri DSM 555	1 T-box(Val) Clostridium novyi NT	1 T-box(Val) Clostridium perfringens ATCC 13124	1 T-box(Val) Clostridium tetani E88	Amino acid metabolism
RF00234	RNA	glmS	1 glmS Clostridium sp. OhILAs	1 glmS Clostridium sp. SS2/1	1 glmS Clostridium sp. L2-50		1 glmS Clostridium cellulolyticum H10	1 glmS Clostridium phytofermentans ISDg	1 glmS Clostridium acetobutylicum ATCC 824	1 glmS Clostridium bolteae ATCC BAA-613	1 glmS Clostridium difficile 630	1 glmS Clostridium bartlettii DSM 16795	1 glmS Clostridium butyricum 5521		1 glmS Clostridium beijerincki NCIMB 8052	1 glmS Clostridium hiranonis DSM 13275	1 glmS Clostridium botulinum A str. ATCC 3502		1 glmS Clostridium kluyveri DSM 555	1 glmS Clostridium novyi NT	1 glmS Clostridium perfringens ATCC 13124	1 glmS Clostridium tetani E88	Amino sugar metabolism
RF00379	RNA	ydaO-yuaA	1 ydaO-yuaA Clostridium sp. OhILAs				4 ydaO-yuaA Clostridium cellulolyticum H10	1 ydaO-yuaA Clostridium phytofermentans ISDg	2 ydaO-yuaA Clostridium acetobutylicum ATCC 824	1 ydaO-yuaA Clostridium bolteae ATCC BAA-613					2 ydaO-yuaA Clostridium beijerincki NCIMB 8052		2 ydaO-yuaA Clostridium botulinum A str. ATCC 3502		2 ydaO-yuaA Clostridium kluyveri DSM 555	1 ydaO-yuaA Clostridium novyi NT		2 ydaO-yuaA Clostridium tetani E88	Cell wall metabolism; Osmotic stress response
RF00380	RNA	ykoK					1 ykoK Clostridium cellulolyticum H10		2 ykoK Clostridium acetobutylicum ATCC 824				1 ykoK Clostridium butyricum 5521	1 ykoK Clostridium nexile DSM 1787	1 ykoK Clostridium beijerincki NCIMB 8052		2 ykoK Clostridium botulinum A str. ATCC 3502		1 ykoK Clostridium kluyveri DSM 555		1 ykoK Clostridium perfringens ATCC 13124		Magnesium homeostasis
RF00442	RNA	ykkC-yxkD	2 ykkC-yxkD Clostridium sp. OhILAs				1 ykkC-yxkD Clostridium cellulolyticum H10				2 ykkC-yxkD Clostridium difficile 630	1 ykkC-yxkD Clostridium bartlettii DSM 16795	1 ykkC-yxkD Clostridium butyricum 5521		1 ykkC-yxkD Clostridium beijerincki NCIMB 8052		1 ykkC-yxkD Clostridium botulinum A str. ATCC 3502		1 ykkC-yxkD Clostridium kluyveri DSM 555		1 ykkC-yxkD Clostridium perfringens ATCC 13124		Multidrug resistance
RF00504	RNA	Glycine	2 Glycine Clostridium sp. OhILAs	1 Glycine Clostridium sp. SS2/1		1 Glycine Clostridium leptum DSM 753	1 Glycine Clostridium cellulolyticum H10		1 Glycine Clostridium acetobutylicum ATCC 824	3 Glycine Clostridium bolteae ATCC BAA-613	3 Glycine Clostridium difficile 630	2 Glycine Clostridium bartlettii DSM 16795	1 Glycine Clostridium butyricum 5521	1 Glycine Clostridium nexile DSM 1787	2 Glycine Clostridium beijerincki NCIMB 8052	3 Glycine Clostridium hiranonis DSM 13275	1 Glycine Clostridium botulinum A str. ATCC 3502	2 Glycine Clostridium scindens ATCC 35704	3 Glycine Clostridium kluyveri DSM 555	1 Glycine Clostridium novyi NT	1 Glycine Clostridium perfringens ATCC 13124	2 Glycine Clostridium tetani E88	Glycine metabolism
RF00515	RNA	PyrR	3 PyrR Clostridium sp. OhILAs				2 PyrR Clostridium cellulolyticum H10		3 PyrR Clostridium acetobutylicum ATCC 824		2 PyrR Clostridium difficile 630	3 PyrR Clostridium bartlettii DSM 16795	4 PyrR Clostridium butyricum 5521		3 PyrR Clostridium beijerincki NCIMB 8052	2 PyrR Clostridium hiranonis DSM 13275	5 PyrR Clostridium botulinum A str. ATCC 3502		3 PyrR Clostridium kluyveri DSM 555	3 PyrR Clostridium novyi NT	4 PyrR Clostridium perfringens ATCC 13124	3 PyrR Clostridium tetani E88	Pyrimidine metabolism
RF00522	RNA	PreQ1	1 PreQ1 Clostridium sp. OhILAs		1 PreQ1 Clostridium sp. L2-50		1 PreQ1 Clostridium cellulolyticum H10	1 PreQ1 Clostridium phytofermentans ISDg	2 PreQ1 Clostridium acetobutylicum ATCC 824	1 PreQ1 Clostridium bolteae ATCC BAA-613	1 PreQ1 Clostridium difficile 630		1 PreQ1 Clostridium butyricum 5521	2 PreQ1 Clostridium nexile DSM 1787	2 PreQ1 Clostridium beijerincki NCIMB 8052	1 PreQ1 Clostridium hiranonis DSM 13275	2 PreQ1 Clostridium botulinum A str. ATCC 3502	1 PreQ1 Clostridium scindens ATCC 35704	1 PreQ1 Clostridium kluyveri DSM 555	2 PreQ1 Clostridium novyi NT	2 PreQ1 Clostridium perfringens ATCC 13124	1 PreQ1 Clostridium tetani E88	Queuosine biosynthesis
RF00556	RNA	L19_leader	1 L19_leader Clostridium sp. OhILAs	1 L19_leader Clostridium sp. SS2/1	1 L19_leader Clostridium sp. L2-50	1 L19_leader Clostridium leptum DSM 753	1 L19_leader Clostridium cellulolyticum H10		1 L19_leader Clostridium acetobutylicum ATCC 824		1 L19_leader Clostridium difficile 630	1 L19_leader Clostridium bartlettii DSM 16795	1 L19_leader Clostridium butyricum 5521	1 L19_leader Clostridium nexile DSM 1787	1 L19_leader Clostridium beijerincki NCIMB 8052		1 L19_leader Clostridium botulinum A str. ATCC 3502	1 L19_leader Clostridium scindens ATCC 35704	1 L19_leader Clostridium kluyveri DSM 555	1 L19_leader Clostridium novyi NT	1 L19_leader Clostridium perfringens ATCC 13124	1 L19_leader Clostridium tetani E88	Ribosome biogenesis
RF00557	RNA	L10_leader	1 L10_leader Clostridium sp. OhILAs	1 L10_leader Clostridium sp. SS2/1	1 L10_leader Clostridium sp. L2-50	1 L10_leader Clostridium leptum DSM 753	1 L10_leader Clostridium cellulolyticum H10	1 L10_leader Clostridium phytofermentans ISDg	1 L10_leader Clostridium acetobutylicum ATCC 824	1 L10_leader Clostridium bolteae ATCC BAA-613	1 L10_leader Clostridium difficile 630	1 L10_leader Clostridium bartlettii DSM 16795		1 L10_leader Clostridium nexile DSM 1787	1 L10_leader Clostridium beijerincki NCIMB 8052	1 L10_leader Clostridium hiranonis DSM 13275	1 L10_leader Clostridium botulinum A str. ATCC 3502	1 L10_leader Clostridium scindens ATCC 35704	1 L10_leader Clostridium kluyveri DSM 555	1 L10_leader Clostridium novyi NT	1 L10_leader Clostridium perfringens ATCC 13124	1 L10_leader Clostridium tetani E88	Ribosome biogenesis
RF00558	RNA	L20_leader	1 L20_leader Clostridium sp. OhILAs	1 L20_leader Clostridium sp. SS2/1	1 L20_leader Clostridium sp. L2-50	1 L20_leader Clostridium leptum DSM 753	1 L20_leader Clostridium cellulolyticum H10	1 L20_leader Clostridium phytofermentans ISDg	1 L20_leader Clostridium acetobutylicum ATCC 824	1 L20_leader Clostridium bolteae ATCC BAA-613	1 L20_leader Clostridium difficile 630	1 L20_leader Clostridium bartlettii DSM 16795		1 L20_leader Clostridium nexile DSM 1787	1 L20_leader Clostridium beijerincki NCIMB 8052	1 L20_leader Clostridium hiranonis DSM 13275	1 L20_leader Clostridium botulinum A str. ATCC 3502	1 L20_leader Clostridium scindens ATCC 35704	1 L20_leader Clostridium kluyveri DSM 555	1 L20_leader Clostridium novyi NT	1 L20_leader Clostridium perfringens ATCC 13124	1 L20_leader Clostridium tetani E88	Ribosome biogenesis
RF00559	RNA	L21_leader	1 L21_leader Clostridium sp. OhILAs		1 L21_leader Clostridium sp. L2-50	1 L21_leader Clostridium leptum DSM 753			1 L21_leader Clostridium acetobutylicum ATCC 824		1 L21_leader Clostridium difficile 630	1 L21_leader Clostridium bartlettii DSM 16795	1 L21_leader Clostridium butyricum 5521	1 L21_leader Clostridium nexile DSM 1787		1 L21_leader Clostridium hiranonis DSM 13275	1 L21_leader Clostridium botulinum A str. ATCC 3502	1 L21_leader Clostridium scindens ATCC 35704	1 L21_leader Clostridium kluyveri DSM 555	1 L21_leader Clostridium novyi NT	1 L21_leader Clostridium perfringens ATCC 13124	1 L21_leader Clostridium tetani E88	Ribosome biogenesis
RF01051	RNA	GEMM_RNA_motif	1 GEMM_RNA_motif Clostridium sp. OhILAs	3 GEMM_RNA_motif Clostridium sp. SS2/1				2 GEMM_RNA_motif Clostridium phytofermentans ISDg		4 GEMM_RNA_motif Clostridium bolteae ATCC BAA-613	6 GEMM_RNA_motif Clostridium difficile 630		2 GEMM_RNA_motif Clostridium butyricum 5521	1 GEMM_RNA_motif Clostridium nexile DSM 1787	4 GEMM_RNA_motif Clostridium beijerincki NCIMB 8052				2 GEMM_RNA_motif Clostridium kluyveri DSM 555	1 GEMM_RNA_motif Clostridium novyi NT	2 GEMM_RNA_motif Clostridium perfringens ATCC 13124	1 GEMM_RNA_motif Clostridium tetani E88	Second messenger response
RF01055	RNA	MOCO_RNA_motif	1 MOCO_RNA_motif Clostridium sp. OhILAs									1 MOCO_RNA_motif Clostridium bartlettii DSM 16795	1 MOCO_RNA_motif Clostridium butyricum 5521					2 MOCO_RNA_motif Clostridium scindens ATCC 35704			1 MOCO_RNA_motif Clostridium perfringens ATCC 13124		Molybdopterin biosynthesis; Molybdenum homeostasis
RF01831	RNA	THF	1 THF Clostridium sp. OhILAs				1 THF Clostridium cellulolyticum H10		1 THF Clostridium acetobutylicum ATCC 824	1 THF Clostridium bolteae ATCC BAA-613				1 THF Clostridium nexile DSM 1787			1 THF Clostridium botulinum A str. ATCC 3502	1 THF Clostridium scindens ATCC 35704	2 THF Clostridium kluyveri DSM 555	1 THF Clostridium novyi NT		1 THF Clostridium tetani E88	Folate metabolism

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Collection of regulogs in Clostridiaceae taxonomic group

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --