Regulog T-box(Val) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Val-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Val-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 2 | 1 |
| Clostridium phytofermentans ISDg | 3 | 2 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 2 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 2 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 3 | 2 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | 3 | 2 |
| Clostridium scindens ATCC 35704 | 4 | 2 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 1 | 1 |
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
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| CRON 1. | |||||||||||||||||||||
| CD2125 |
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Clostridium botulinum A str. ATCC 3502 Site: position = -298 score = 109.69 sequence = AAATAAAGCTTTGAA... Gene: CBO3165: Acetyltransferase (GNAT) family protein |
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Acetyltransferase, GNAT family |
| valS |
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Clostridium kluyveri DSM 555 Site: position = -268 score = 109.12 sequence = TGTAATCACTGTGAA... Gene: CKL_3219: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Gene: Ccel_1199: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium phytofermentans ISDg Site: position = -455 score = 90.13 sequence = TAAATGTAGTGATGG... Gene: null: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium tetani E88 Site: position = -307 score = 103.96 sequence = AATAAAAGCTGTGAA... Gene: CTC02302: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium acetobutylicum ATCC 824 Site: position = -268 score = 120.28 sequence = AATATAAACGCTGAA... Gene: CAC2399: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: CBO3164: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium novyi NT Site: position = -282 score = 107.6 sequence = TAAAAACAGAGAAAA... Gene: NT01CX_1727: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium perfringens ATCC 13124 Site: position = -446 score = 117.86 sequence = GATACAAACAGTGAT... Gene: CPF_2175: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium difficile 630 Site: position = -339 score = 97.55 sequence = ATTAAAGACTGAGAA... Gene: CD3256: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium beijerincki NCIMB 8052 Site: position = -495 score = 80.34 sequence = CTAAATCATAGATTT... Gene: Cbei_1782: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium sp. OhILAs Site: position = -283 score = 128.02 sequence = GATATCAACAATGAT... Gene: Clos_2038: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium sp. L2-50 Site: position = -178 score = 106.59 sequence = CATAAATGCAAGGAA... Gene: CLOL250_01610: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium scindens ATCC 35704 Site: position = -335 score = 97.97 sequence = CGTAAAGGCATTGAA... Gene: CLOSCI_02273: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium nexile DSM 1787 Site: position = -195 score = 94.78 sequence = GCAAAAGGTAATGAG... Gene: CLONEX_03903: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium hiranonis DSM 13275 Site: position = -377 score = 123.63 sequence = TACAGACGTTGAAGA... Gene: CLOHIR_00746: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium butyricum 5521 Site: position = -443 score = 107.35 sequence = TAAAAGCAATGATAA... Gene: CBY_0347: Valyl-tRNA synthetase (EC 6.1.1.9) |
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Clostridium bartlettii DSM 16795 Site: position = -383 score = 108.17 sequence = AAAAGACTGAGAAAA... Gene: CLOBAR_00333: Valyl-tRNA synthetase (EC 6.1.1.9) |
Valyl-tRNA synthetase (EC 6.1.1.9) |
| Ccel_1198 |
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Clostridium cellulolyticum H10 Site: position = -283 score = 102.13 sequence = TAAAGGCTGTGAATA... Gene: Ccel_1198: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||||||||||||
| ilvD |
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Clostridium phytofermentans ISDg Site: position = -348 score = 50.36 sequence = ACTTATAGCCATATG... Gene: Cphy_3348: Dihydroxy-acid dehydratase (EC 4.2.1.9) |
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Dihydroxy-acid dehydratase (EC 4.2.1.9) |
| ilvB |
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Gene: Cphy_3347: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Clostridium beijerincki NCIMB 8052 Site: position = -402 score = 106.83 sequence = TAAAAACTGTGAAGA... Gene: Cbei_2646: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Acetolactate synthase large subunit (EC 2.2.1.6) |
| ilvH1 |
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Gene: Cbei_2647: Acetolactate synthase small subunit (EC 2.2.1.6) |
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Acetolactate synthase small subunit (EC 2.2.1.6) |
| CRON 3. | |||||||||||||||||||||
| ilvB1 |
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Gene: CLOSS21_00852: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Clostridium sp. L2-50 Site: position = -352 score = 111.61 sequence = GTCAAATGCAATGAC... Gene: CLOL250_00238: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Clostridium scindens ATCC 35704 Site: position = -326 score = 103.43 sequence = GAAATGCTATGACAA... Gene: CLOSCI_01159: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: CLONEX_03220: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Gene: CLOBAR_00918: Acetolactate synthase large subunit (EC 2.2.1.6) |
Acetolactate synthase large subunit (EC 2.2.1.6) |
| ilvH2 |
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Gene: CLOSS21_00851: Acetolactate synthase small subunit (EC 2.2.1.6) |
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Gene: CLOL250_00237: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: CLOSCI_01160: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: CLONEX_03219: Acetolactate synthase small subunit (EC 2.2.1.6) |
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Gene: CLOBAR_00919: Acetolactate synthase small subunit (EC 2.2.1.6) |
Acetolactate synthase small subunit (EC 2.2.1.6) |
| ilvE1 |
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Gene: CLOSS21_00092: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Gene: CPF_1772: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Gene: Cbei_1043: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: Clos_0407: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: CLOL250_00400: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: CLOSCI_01161: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: CLONEX_03218: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Gene: CBY_0273: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: CLOBOL_04945: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
| CRON 4. | |||||||||||||||||||||
| ilvC |
2
Clostridium kluyveri DSM 555 Gene: CKL_1080: Ketol-acid reductoisomerase (EC 1.1.1.86) Gene: CKL_1089: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLOSS21_01058: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: Ccel_3435: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: null: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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Clostridium acetobutylicum ATCC 824 Site: position = -393 score = 107.79 sequence = CAAAGACAATGATGA... Gene: CAC0091: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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Gene: NT01CX_2028: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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Gene: CD1565: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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Gene: CLOL250_00225: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLOSCI_00393: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLONEX_01516: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLOLEP_00058: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLOHIR_01818: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CBY_2921: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLOBOL_05328: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Gene: CLOBAR_01659: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Ketol-acid reductoisomerase (EC 1.1.1.86) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |