Regulog L20_leader - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | L20_leader |
| RFAM: | RF00558 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - L20_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 2 | 1 |
| Clostridium sp. SS2/1 | 3 | 1 |
| Clostridium cellulolyticum H10 | 3 | 1 |
| Clostridium phytofermentans ISDg | 3 | 1 |
| Clostridium tetani E88 | 2 | 1 |
| Clostridium acetobutylicum ATCC 824 | 3 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 3 | 1 |
| Clostridium novyi NT | 3 | 1 |
| Clostridium perfringens ATCC 13124 | 3 | 1 |
| Clostridium difficile 630 | 3 | 1 |
| Clostridium beijerincki NCIMB 8052 | 3 | 1 |
| Clostridium sp. OhILAs | 3 | 1 |
| Clostridium sp. L2-50 | 3 | 1 |
| Clostridium scindens ATCC 35704 | 3 | 1 |
| Clostridium nexile DSM 1787 | 3 | 1 |
| Clostridium leptum DSM 753 | 3 | 1 |
| Clostridium hiranonis DSM 13275 | 3 | 1 |
| Clostridium butyricum 5521 | ||
| Clostridium bolteae ATCC BAA-613 | 3 | 1 |
| Clostridium bartlettii DSM 16795 | 3 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| infC |
Gene: CKL_1604: Translation initiation factor 3 |
*
Clostridium sp. SS2/1 Site: position = -92 score = 29.56 sequence = CAACAAAGAAGAGTA... Gene: CLOSS21_02197: Translation initiation factor 3 |
*3
Clostridium cellulolyticum H10 Site: position = -220 score = 41.65 sequence = AAAACAAGAAGAAGT... Gene: Ccel_1311: Translation initiation factor 3 Gene: Ccel_2619: Translation initiation factor 3 Gene: Ccel_2666: Translation initiation factor 3 |
*
Clostridium phytofermentans ISDg Site: position = -218 score = 26.51 sequence = ATAGCAAGTAGAGTA... Gene: null: Translation initiation factor 3 |
*
Clostridium tetani E88 Site: position = -126 score = 66.37 sequence = AAACGTTAAGAAGAA... Gene: CTC02285: Translation initiation factor 3 |
*
Clostridium acetobutylicum ATCC 824 Site: position = -149 score = 57.52 sequence = AGTATTGAAGAAGAA... Gene: CAC2361: Translation initiation factor 3 |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -162 score = 54.1 sequence = TTTATGTAAGTAGAA... Gene: CBO3137: Translation initiation factor 3 |
*
Clostridium novyi NT Site: position = -316 score = 61.85 sequence = TCGTTAAGAAGAAAC... Gene: NT01CX_1761: Translation initiation factor 3 |
*
Clostridium perfringens ATCC 13124 Site: position = -150 score = 70.05 sequence = TGATGTCAAGAAGAA... Gene: CPF_2146: Translation initiation factor 3 |
*
Clostridium difficile 630 Site: position = -163 score = 31.86 sequence = AAACAAAGAAGAAGT... Gene: CD0685: Translation initiation factor 3 |
*
Clostridium beijerincki NCIMB 8052 Site: position = -104 score = 42.82 sequence = ATGTTAAGAAGAAAC... Gene: Cbei_1569: Translation initiation factor 3 |
*
Clostridium sp. OhILAs Site: position = -271 score = 35.57 sequence = GTAAACAAAGAAGAA... Gene: Clos_1978: Translation initiation factor 3 |
*
Clostridium sp. L2-50 Site: position = -156 score = 50.66 sequence = CAAGAAAGCAGAGTA... Gene: CLOL250_00814: Translation initiation factor 3 |
*
Clostridium scindens ATCC 35704 Site: position = -171 score = 24.39 sequence = AAACAAAGTAGAGTA... Gene: CLOSCI_01277: Translation initiation factor 3 |
*
Clostridium nexile DSM 1787 Site: position = -210 score = 31.1 sequence = AAAAAGAAAGCAGAG... Gene: CLONEX_02671: Translation initiation factor 3 |
*
Clostridium leptum DSM 753 Site: position = -79 score = 34.51 sequence = TACAACAAAGCAGAG... Gene: CLOLEP_03303: Translation initiation factor 3 |
*
Clostridium hiranonis DSM 13275 Site: position = -246 score = 35.07 sequence = ACAGCAAGTAGAAAT... Gene: CLOHIR_01892: Translation initiation factor 3 |
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -240 score = 16.05 sequence = GACAGGAAAGCAGGT... Gene: CLOBOL_05438: Translation initiation factor 3 |
*
Clostridium bartlettii DSM 16795 Site: position = -249 score = 25.99 sequence = AACAGTAAAGAAGAA... Gene: CLOBAR_01302: Translation initiation factor 3 |
Translation initiation factor 3 |
| rpmI |
*
Clostridium kluyveri DSM 555 Site: position = -190 score = 58.76 sequence = AAACGTTAAGAAGAA... Gene: CKL_3195: LSU ribosomal protein L35p |
Gene: CLOSS21_02198: LSU ribosomal protein L35p |
Gene: Ccel_1312: LSU ribosomal protein L35p |
Gene: null: LSU ribosomal protein L35p |
|
Gene: CAC2360: LSU ribosomal protein L35p |
Gene: CBO3136: LSU ribosomal protein L35p |
Gene: NT01CX_1762: LSU ribosomal protein L35p |
Gene: CPF_2145: LSU ribosomal protein L35p |
Gene: CD0686: LSU ribosomal protein L35p |
Gene: Cbei_1570: LSU ribosomal protein L35p |
Gene: Clos_1977: LSU ribosomal protein L35p |
Gene: CLOL250_00815: LSU ribosomal protein L35p |
Gene: CLOSCI_01278: LSU ribosomal protein L35p |
Gene: CLONEX_02670: LSU ribosomal protein L35p |
Gene: CLOLEP_03302: LSU ribosomal protein L35p |
Gene: CLOHIR_01893: LSU ribosomal protein L35p |
|
Gene: CLOBOL_05437: LSU ribosomal protein L35p |
Gene: CLOBAR_01301: LSU ribosomal protein L35p |
LSU ribosomal protein L35p |
| rplT |
Gene: CKL_3194: LSU ribosomal protein L20p |
Gene: CLOSS21_02199: LSU ribosomal protein L20p |
Gene: Ccel_1313: LSU ribosomal protein L20p |
Gene: null: LSU ribosomal protein L20p |
Gene: CTC02283: LSU ribosomal protein L20p |
Gene: CAC2359: LSU ribosomal protein L20p |
Gene: CBO3135: LSU ribosomal protein L20p |
Gene: NT01CX_1763: LSU ribosomal protein L20p |
Gene: CPF_2144: LSU ribosomal protein L20p |
Gene: CD0687: LSU ribosomal protein L20p |
Gene: Cbei_1571: LSU ribosomal protein L20p |
Gene: Clos_1976: LSU ribosomal protein L20p |
Gene: CLOL250_00816: LSU ribosomal protein L20p |
Gene: CLOSCI_01279: LSU ribosomal protein L20p |
Gene: CLONEX_02669: LSU ribosomal protein L20p |
Gene: CLOLEP_03301: LSU ribosomal protein L20p |
Gene: CLOHIR_01894: LSU ribosomal protein L20p |
|
Gene: CLOBOL_05436: LSU ribosomal protein L20p |
Gene: CLOBAR_01300: LSU ribosomal protein L20p |
LSU ribosomal protein L20p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |